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4 changes: 0 additions & 4 deletions docs/source/acquire_upload/index.md
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---
orphan: true
---

# Acquire, upload & process

## I want to...
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7 changes: 0 additions & 7 deletions docs/source/explore_analyze/find_data.md
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Expand Up @@ -97,10 +97,3 @@ records = client.retrieve_docdb_records(
```

More details about DocDB queries can be found in the [aind-data-access-api#querying-metadata documentation](https://aind-data-access-api.readthedocs.io/en/latest/ExamplesDocDBRestApi.html#querying-metadata)

## Dashboards

We are expanding the number of platform and project dashboards based on V2 metadata over time. We currently host:

- [data portal](https://data.allenneuraldynamics.org/assets) is a tool for finding and exploring data assets. Currently, you can search all assets that have V2 metadata and easily click links to go to the Code Ocean data asset, metadata, and QC report.
- [smartspim dashboard](https://data.allenneuraldynamics-test.org/smartspim)
11 changes: 5 additions & 6 deletions docs/source/explore_analyze/index.md
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orphan: true
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# Explore, QC & analyze

Raw assets uploaded from platforms at AIND are run through automated pipelines that produce derived assets. You can explore these assets through the [Data Portal](https://data.allenneuraldynamics.org/assets).
Expand All @@ -16,9 +12,12 @@ There are also Platform dashboards for each of the major platforms in Neural Dyn

| Platform | Dashboard | Internal Site |
| -- | -- | -- |
| SmartSPIM | [Dashboard](https://data.allenneuraldynamics.org/smartspim) | [Internal Site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/SmartSPIM-Platform.aspx) |
| Fiber Photometry | [Dashboard](https://data.allenneuraldynamics.org/fiber_photometry) | [Internal site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/Fiber-Photometry-Platform.aspx) |
| ExaSPIM | [Dashboard](https://data.allenneuraldynamics.org/exaspim) | |
| Dynamic Foraging | [Dashboard](https://data.allenneuraldynamics.org/dynamic_foraging)| |
| Dynamic Routing | [Dashboard](https://data.allenneuraldynamics.org/dynamic_routing)| |
| Fiber Photometry | [Dashboard](https://data.allenneuraldynamics.org/fiber_photometry) | [Internal site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/Fiber-Photometry-Platform.aspx) |
| SLAP2 | [Dashboard](https://data.allenneuraldynamics.org/slap2) | |
| SmartSPIM | [Dashboard](https://data.allenneuraldynamics.org/smartspim) | [Internal Site](https://alleninstitute.sharepoint.com/sites/NeuralDynamics/SitePages/SmartSPIM-Platform.aspx) |
| VR Foraging | [Dashboard](https://data.allenneuraldynamics.org/vr_foraging) | |

## I want to...
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21 changes: 3 additions & 18 deletions docs/source/index.md
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Expand Up @@ -48,25 +48,10 @@ Follow these links to request access to:
```{toctree}
:maxdepth: 1
:hidden:
:caption: Acquire, upload & process
:caption: How-to

acquire_upload/prepare_before_acquisition
acquire_upload/acquire_data
acquire_upload/calibration
acquire_upload/upload_data
acquire_upload/process_data

```

```{toctree}
:maxdepth: 1
:hidden:
:caption: Explore, QC & analyze

explore_analyze/quality_control
explore_analyze/find_data
explore_analyze/analyze_data
explore_analyze/outreach
acquire_upload/index
explore_analyze/index


```
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