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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 43 12

  2. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 34 21

  3. openscope-community-predictive-processing openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 27 13

  4. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 14 3

  5. supervoxel-loss supervoxel-loss Public

    Efficient connectivity-preserving loss function for training neural networks to perform instance segmentation.

    Python 13 2

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 12 4

Repositories

Showing 10 of 712 repositories
  • biodata-cache Public

    Caching tools for storing expensive DocDB queries and S3 data tables in Redshift

    AllenNeuralDynamics/biodata-cache's past year of commit activity
    Python 0 MIT 1 4 6 Updated Oct 9, 2026
  • rachel-analysis-utils Public

    rachel's analysis utils for AIND-analysis-framework instances.

    AllenNeuralDynamics/rachel-analysis-utils's past year of commit activity
    Python 0 MIT 0 0 2 Updated Oct 9, 2026
  • aind-dft-ephys-analysis Public

    shared library for dynamic foraging task (DFT) - neuropixels analysis

    AllenNeuralDynamics/aind-dft-ephys-analysis's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 9, 2026
  • AllenNeuralDynamics/aind-docker-images's past year of commit activity
    Dockerfile 0 MIT 0 3 9 Updated Oct 9, 2026
  • package-brain-atlas-assets Public

    Reorganize various brain atlas data assets into a standard organization and metadata convention.

    AllenNeuralDynamics/package-brain-atlas-assets's past year of commit activity
    Python 0 MIT 0 2 0 Updated Oct 9, 2026
  • ophys-slap2-analysis Public

    Data reduction, preprocessing, and analysis for SLAP2 microscopes

    AllenNeuralDynamics/ophys-slap2-analysis's past year of commit activity
    Jupyter Notebook 3 2 2 2 Updated Oct 9, 2026
  • one-liner Public

    adapter pattern implemented as zmq client/server

    AllenNeuralDynamics/one-liner's past year of commit activity
    Python 3 MIT 0 27 1 Updated Oct 9, 2026
  • contraqctor Public

    A library for managing data contracts and quality control in behavioral datasets.

    AllenNeuralDynamics/contraqctor's past year of commit activity
    Python 0 MIT 1 9 1 Updated Oct 9, 2026
  • brainwasher Public

    0354: control software for automated tissue clearing system

    AllenNeuralDynamics/brainwasher's past year of commit activity
    Python 0 MIT 1 15 6 Updated Oct 9, 2026
  • aind-software-docs Public

    Centralized documentation repository for Scientific Computing, publishes to RTD

    AllenNeuralDynamics/aind-software-docs's past year of commit activity
    Python 1 MIT 0 43 10 Updated Oct 9, 2026