Issues

• Validation failures in gather_preliminary_metadata should be more informative

  AllenNeuralDynamics/aind-metadata-mapper#499 · Filter by author dougollerenshaw opened on Oct 7, 2026
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• fip mapper fails for null RoiSettings

  AllenNeuralDynamics/aind-metadata-mapper#498 · Filter by author bruno-f-cruz opened on Oct 6, 2026
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• Pull waterlog weight from new service endpoint and add to acquisition.subject_details

  AllenNeuralDynamics/aind-metadata-mapper#496 · Filter by author dbirman opened on Oct 1, 2026 · Analysis and Support 26Q4
  

• Update to support biodata-schema

  AllenNeuralDynamics/aind-metadata-mapper#492 · Filter by author dbirman opened on Sep 16, 2026 · Analysis and Support 26Q4
  

• BaseMapper incorrectly cited in readme

  AllenNeuralDynamics/aind-metadata-mapper#483 · Filter by author dougollerenshaw opened on Jul 1, 2026
  

• GatherMetadataJob should raise an error when subject.sex or subject.genotype are null

  AllenNeuralDynamics/aind-metadata-mapper#479 · Filter by author dbirman opened on Jun 10, 2026
  

• GathereMetadataJob should automatically populate curriculum fields in StimulusEpoch

  AllenNeuralDynamics/aind-metadata-mapper#465 · Filter by author dbirman opened on Mar 25, 2026 · Automating metadata capture for training protocols
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• GatherMetadataJob should accept multiple instrument_ids and ensure alphabetical order when merging

  AllenNeuralDynamics/aind-metadata-mapper#448 · Filter by author dbirman opened on Feb 2, 2026
  

• Multiplane-ophys V2: Map the mesoscope extracted data to an acquisition file

  AllenNeuralDynamics/aind-metadata-mapper#438 · Filter by author arielleleon opened on Dec 19, 2025 · 2p-ophys: Refactor pipeline, fix backlog of issues and upgrade pipeline to schema v2.0
  

• Update FIP mapper to use passed patch_cable to fiber connection info

  AllenNeuralDynamics/aind-metadata-mapper#416 · Filter by author dougollerenshaw opened on Dec 1, 2025
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• Add functionality to ingest extracted output from Opto Fiber Benchmark epxerimental workflow and pass to mapper

  AllenNeuralDynamics/aind-metadata-mapper#410 · Filter by author arjunsridhar12345 opened on Nov 25, 2025
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• Add laser power mapping for each mesoscope plane

  AllenNeuralDynamics/aind-metadata-mapper#372 · Filter by author dougollerenshaw opened on Oct 13, 2025 · 2p-ophys: Refactor pipeline, fix backlog of issues and upgrade pipeline to schema v2.0
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• multiplane-ophys QC z-drift local stack

  AllenNeuralDynamics/aind-metadata-mapper#370 · Filter by author shiellac opened on Oct 11, 2025 · Support for existing physiology and behavior pipelines (26Q3)
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• Update SmartSPIM acquisition to accommodate laser calibration

  AllenNeuralDynamics/aind-metadata-mapper#343 · Filter by author miketaormina opened on Aug 14, 2025
  

• Port bruker extractor to aind-metadata-extractor

  AllenNeuralDynamics/aind-metadata-mapper#336 · Filter by author arielleleon opened on Aug 7, 2025

• Port dynamic routing extractor to aind-metadata-extractor

  AllenNeuralDynamics/aind-metadata-mapper#335 · Filter by author arielleleon opened on Aug 7, 2025

• Port open ephys extractor to aind-metadata-extractor

  AllenNeuralDynamics/aind-metadata-mapper#332 · Filter by author arielleleon opened on Aug 7, 2025

• Port pavlovian behavior extractor to aind-metadata-extractor

  AllenNeuralDynamics/aind-metadata-mapper#331 · Filter by author arielleleon opened on Aug 7, 2025 · Support for existing physiology and behavior pipelines (26Q3)
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• Modify mesoscope metadata mapper for deepdive data

  AllenNeuralDynamics/aind-metadata-mapper#320 · Filter by author arielleleon opened on Jul 18, 2025

• Add a new behavior type for Bergamo

  AllenNeuralDynamics/aind-metadata-mapper#309 · Filter by author arielleleon opened on Jun 18, 2025
  

• Define datasets for integration testing of metadata mapper

  AllenNeuralDynamics/aind-metadata-mapper#308 · Filter by author arielleleon opened on Jun 17, 2025
  

• Add stimulus epoch for bci single neuron stim control

  AllenNeuralDynamics/aind-metadata-mapper#306 · Filter by author arielleleon opened on Jun 5, 2025

• Add session_type to Bergamo session model

  AllenNeuralDynamics/aind-metadata-mapper#299 · Filter by author arielleleon opened on May 28, 2025
  

• Add support for optogenetic FIP sessions and improve file pattern detection

  AllenNeuralDynamics/aind-metadata-mapper#298 · Filter by author dougollerenshaw opened on May 28, 2025
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• fix: photostimulation trials mislabeled as spontaneous

  AllenNeuralDynamics/aind-metadata-mapper#295 · Filter by author arielleleon opened on May 15, 2025
  2