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Merged
behrica merged 14 commits into from
May 13, 2026
Merged

Tmd8 #204

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a2374ac
try tc-8
behrica Mar 22, 2026
12133d6
added import of "t.m.d.nippy"
behrica Mar 31, 2026
1ef87a1
reduce expected accuracy
behrica Apr 1, 2026
5bf37d8
use upgraded dependencies (TMD 8.016)
behrica Apr 2, 2026
ee7176e
reduced target to 0.75
behrica Apr 2, 2026
67abe5f
upraded some more dependencies to use TMD 8.x
behrica Apr 13, 2026
5d50526
enable predictFn validation
behrica Apr 3, 2026
6b1cd57
latest version of metamorph.ml
Apr 7, 2026
f4346f4
removed tcutils
behrica May 7, 2026
26aff3a
use latest fastmath
behrica May 12, 2026
fdc3be5
removed deps.txt
behrica May 13, 2026
9652653
enable predictFn validation
behrica Apr 3, 2026
77f5127
strict check not ready
behrica May 13, 2026
a5c55ee
report change
behrica May 13, 2026
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4 changes: 2 additions & 2 deletions .github/workflows/ci.yml
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Expand Up @@ -33,7 +33,7 @@ jobs:
uses: devcontainers/ci@v0.3
with:
push: never
runCmd: clj -X:deps prep :aliases [:model-integration-tests,:dev,:test] && clj -Sthreads 1 -T:build ci
runCmd: clj -Sthreads 1 -X:deps prep :aliases [:model-integration-tests,:dev,:test] && clj -Sthreads 1 -T:build ci

make-doc:

Expand All @@ -54,7 +54,7 @@ jobs:
with:

push: never
runCmd: clj -X:deps prep :aliases [:model-integration-tests,:dev,:test] && clj -Sthreads 1 -A:dev -X dev/render-all-notebooks
runCmd: clj -Sthreads 1 -X:deps prep :aliases [:model-integration-tests,:dev,:test] && clj -Sthreads 1 -A:dev -X dev/render-all-notebooks

- name: fix permisions
run: sudo chmod o+w docs/
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3 changes: 3 additions & 0 deletions CHANGELOG.md
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@@ -1,6 +1,9 @@
# Change Log
All notable changes to this project will be documented in this file. This change log follows the conventions of [keepachangelog.com](http://keepachangelog.com/).

## unreleased
- upgraded all noj dependencies to use TMD 8

## [2-beta24 - 2026-03-17]
- updated metamorph.ml,sklearn-clj,scicloj.ml.xgboost,scicloj.ml.tribuo,clay
- minor updates of several non-scicloj dependencies
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31 changes: 15 additions & 16 deletions deps.edn
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@@ -1,20 +1,18 @@
{:paths ["src" "resources"]
:deps {org.clojure/clojure {:mvn/version "1.12.4"}
clojure.java-time/clojure.java-time {:mvn/version "1.4.3"}
scicloj/tablecloth {:mvn/version "7.067"}

org.scicloj/tcutils {:mvn/version "0.1.0-alpha2"}

org.scicloj/dataset-io {:mvn/version "1.0.0"}
org.scicloj/kindly {:mvn/version "4-beta23"}

generateme/fastmath {:mvn/version "3.0.0-alpha4"}
generateme/fastmath {:mvn/version "3.0.0-alpha7"}
generateme/fitdistr {:mvn/version "1.1.0-alpha1"}
org.scicloj/tableplot {:mvn/version "1-beta16"}
org.scicloj/metamorph.ml {:mvn/version "1.3.0"}
org.scicloj/sklearn-clj {:mvn/version "0.6"}
org.scicloj/scicloj.ml.xgboost {:mvn/version "6.5.0"}
org.scicloj/tableplot {:mvn/version "1-beta17"}
org.scicloj/metamorph.ml {:mvn/version "1.3.2"}
org.scicloj/sklearn-clj {:mvn/version "0.6.1"}
org.scicloj/scicloj.ml.xgboost {:mvn/version "6.5.1"}

org.scicloj/scicloj.ml.tribuo {:mvn/version "0.3"}
org.scicloj/scicloj.ml.tribuo {:mvn/version "0.3.1"}

org.tribuo/tribuo-regression-liblinear {:mvn/version "4.3.2"}
org.tribuo/tribuo-regression-libsvm {:mvn/version "4.3.2"}
Expand All @@ -30,12 +28,12 @@

clj-python/libpython-clj {:mvn/version "2.026"}
org.scicloj/kind-pyplot {:mvn/version "1-beta2.1"}
scicloj/clojisr {:mvn/version "1.0.0"}
scicloj/clojisr {:mvn/version "1.1.0"}

same/ish {:mvn/version "0.1.7"}

org.babashka/sci {:mvn/version "0.12.51"}
org.scicloj/clay {:mvn/version "2.0.14"}}
org.scicloj/clay {:mvn/version "2.0.15"}}

:aliases
{:gen-tests {:extra-paths ["build"]}
Expand All @@ -50,7 +48,8 @@
lambdaisland/kaocha {:mvn/version "1.91.1392"}
org.slf4j/slf4j-nop {:mvn/version "2.0.17"}
clj-http/clj-http {:mvn/version "3.13.1"}
org.scicloj/scicloj.ml.smile {:mvn/version "7.5.3"}}}

org.scicloj/scicloj.ml.smile {:mvn/version "7.6.2"}}}

:model-integration-tests
{:extra-paths ["model-integration-tests" "notebooks"]
Expand All @@ -60,7 +59,7 @@
org.bytedeco/arpack-ng-platform {:mvn/version "3.7.0-1.5.4"}
org.bytedeco/openblas {:mvn/version "0.3.10-1.5.4"}
org.bytedeco/javacpp {:mvn/version "1.5.4"}
org.scicloj/scicloj.ml.smile {:mvn/version "7.6.0"}
org.scicloj/scicloj.ml.smile {:mvn/version "7.6.2"}

com.taoensso/nippy {:mvn/version "3.6.0"}

Expand All @@ -78,7 +77,8 @@
org.bytedeco/javacpp {:mvn/version "1.5.4"}
com.oracle.labs.olcut/olcut-config-edn {:mvn/version "5.3.1"}
com.oracle.labs.olcut/olcut-config-json {:mvn/version "5.3.1"}
org.scicloj/scicloj.ml.smile {:mvn/version "7.6.0"}
org.scicloj/scicloj.ml.smile {:mvn/version "7.6.2"}

org.clojars.kjw/slf4j-simple {:mvn/version "1.5.5"}}}

:outdated {;; Note that it is `:deps`, not `:extra-deps`
Expand All @@ -87,7 +87,6 @@
:uber-clay {:extra-deps {org.slf4j/slf4j-simple {:mvn/version "1.7.36"}}}
:clojupyter {:extra-deps {clojupyter/clojupyter
{:git/url "https://github.com/clojupyter/clojupyter"
:git/sha "797261501b6c0f11a600f6030d720fa9157005d8"}
}
:git/sha "797261501b6c0f11a600f6030d720fa9157005d8"}}
;;{:mvn/version "0.4.332"}
}}}
9 changes: 7 additions & 2 deletions model-integration-tests/model_integration_test.clj
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Expand Up @@ -17,6 +17,7 @@
[tech.v3.dataset :as ds]
[tech.v3.dataset.categorical :as ds-cat]
[tech.v3.dataset.modelling :as ds-mod]
[tech.v3.dataset.io.nippy]
[scicloj.ml.tribuo]
[clojure.java.io :as io])
(:import
Expand All @@ -40,6 +41,9 @@ warnings.simplefilter('ignore')")
(SLF4JBridgeHandler/removeHandlersForRootLogger)
(SLF4JBridgeHandler/install)

;; TODO enable with metamorph.ml 1.5.1
(reset! ml/enable-strict-prediction-validations false);; TODO some tests fail with 'true'

(def mlp-hidden-layer-builder
(HiddenLayerBuilder. 1 (ActivationFunction/linear)))

Expand Down Expand Up @@ -92,10 +96,10 @@ warnings.simplefilter('ignore')")
:sklearn.classification/dummy-classifier 0.2
:sklearn.classification/ridge-classifier-cv 0.80
:sklearn.classification/linear-svc 0.93
:sklearn.classification/passive-aggressive-classifier 0.78
:sklearn.classification/passive-aggressive-classifier 0.75
:sklearn.classification/bernoulli-nb 0.20
:sklearn.classification/perceptron 0.80
:sklearn.classification/sgd-classifier 0.70
:sklearn.classification/sgd-classifier 0.65

:metamorph.ml/dummy-classifier 0.2})

Expand Down Expand Up @@ -332,6 +336,7 @@ warnings.simplefilter('ignore')")
;;https://github.com/scicloj/scicloj.ml.smile/issues/19
(remove-model-type :smile.classification/mlp)))))


(deftest verify-classification-iris-nil-catmap-float
(let [iris
(->
Expand Down
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