GitHub - samupicard/Multiphoton-Toolbox: Python toolbox for analysing data from two photon imaging experiments · GitHub

Repository navigation

Multiphoton-Toolbox

Public

forked from yves-weissenberger/twoptb

About

Python toolbox for analysing data from two photon imaging experiments

0 stars

0 watching

Report repository

Name		Name	Last commit message	Last commit date
ROIs		ROIs
file_management		file_management
image_registration		image_registration
imports		imports
misc		misc
process_data		process_data
.DS_Store		.DS_Store
.gitignore		.gitignore
Data_Viewer		Data_Viewer
Package_Analysis.ipynb		Package_Analysis.ipynb
README.md		README.md
README.txt		README.txt
ROI_editor.png		ROI_editor.png
__init__.py		__init__.py
__init__.pyc		__init__.pyc
convert_to_hdf5.py		convert_to_hdf5.py
motion_register_data.py		motion_register_data.py
preprocess_traces.py		preprocess_traces.py
to-do list		to-do list
util.py		util.py
view_data.py		view_data.py

Repository files navigation

#A toolbox (under development) for processing two-photon imaging data in python2.7

Includes complete pre-processing pipeline image registration GUIs for ROI extraction and mask drawing

Dependencies

numpy

scipy

scikit-image

* tifffile * pyqt * pyqtgraph (optional)

About

Python toolbox for analysing data from two photon imaging experiments

0 stars

0 watching

Report repository

Releases

Packages

Contributors

Languages