Issues

• Question about UMI deduplication step when starting from BAM files

  salzman-lab/SICILIAN#29 · Filter by author CCCBBG opened on Jun 11, 2025

• class_input_secondary is commented out

  salzman-lab/SICILIAN#28 · Filter by author QuanlongJiang opened on Oct 12, 2024

• Enhancement step: updating light_utils.py to run with current Pandas & Numpy when there are no junctions

  salzman-lab/SICILIAN#26 · Filter by author fomightez opened on Jul 25, 2024

• [404] Page not found: https://github.com/salzman-lab/nf-sicilian?tab=readme-ov-file

  salzman-lab/SICILIAN#25 · Filter by author Whistick opened on Jun 21, 2024
  1

• Error processing Gencode GTF

  salzman-lab/SICILIAN#23 · Filter by author mblanche opened on Apr 22, 2024

• domains file :i could not find domains file

  salzman-lab/SICILIAN#22 · Filter by author lancy-liang opened on May 1, 2023
  1

• create annotator from 10x references genes.gtf.gz

  salzman-lab/SICILIAN#21 · Filter by author leezx opened on Mar 13, 2023
  1

• EXITING: because of fatal INPUT file error: could not open read file

  salzman-lab/SICILIAN#20 · Filter by author TinyTasy opened on Nov 15, 2022
  2

• AssertionError: bam_read1.query_name==bam_read2.query_name

  salzman-lab/SICILIAN#18 · Filter by author zyh4482 opened on Oct 15, 2022

• The detection of 10X single-cell transcriptome gene fusion

  salzman-lab/SICILIAN#17 · Filter by author chuiqin opened on Sep 24, 2022
  1

• Index Error when trying to run create_annotator.py

  salzman-lab/SICILIAN#10 · Filter by author gabee-chan opened on Mar 28, 2022
  4