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Main - logged - #15

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michaelJwilson wants to merge 126 commits into
mainfrom
main_logged
Open

Main - logged#15
michaelJwilson wants to merge 126 commits into
mainfrom
main_logged

Commits

Commits on Aug 8, 2024

Commits on Aug 11, 2024

Commits on Aug 12, 2024

Commits on Aug 15, 2024

Commits on Aug 16, 2024

Commits on Aug 17, 2024

  • fix bugs

    author
    Michael J. Wilson
    committed
    d4db18d

  • fix

    author
    Michael J. Wilson
    committed
    94c5a15

Commits on Aug 18, 2024

  • logging fixes

    author
    Michael J. Wilson
    committed
    776eeb0

  • fix

    author
    Michael J. Wilson
    committed
    4d5466a

  • add Baum-Welch log lines.

    author
    Michael J. Wilson
    committed
    11f7c93

  • fix

    author
    Michael J. Wilson
    committed
    9d70901

  • fix logging.

    author
    Michael J. Wilson
    committed
    c91591d

  • log bandwidth

    author
    Michael J. Wilson
    committed
    2003e04

  • fix logging

    author
    Michael J. Wilson
    committed
    27603ec

  • fix

    author
    Michael J. Wilson
    committed
    fafef1f

  • fix logging

    author
    Michael J. Wilson
    committed
    ee1810e

  • fix logging bug

    author
    Michael J. Wilson
    committed
    03db264

  • add TODO for gammas in phasing beta binomial

    author
    Michael J. Wilson
    committed
    cef4eb2

  • fix

    author
    Michael J. Wilson
    committed
    fbbb9b5

  • fix

    author
    Michael J. Wilson
    committed
    3409014

  • fix

    author
    Michael J. Wilson
    committed
    f3c06bc

  • fix

    author
    Michael J. Wilson
    committed
    48a34a4

  • add hmrf logging

    author
    Michael J. Wilson
    committed
    c58ea89

  • add cpas

    author
    Michael J. Wilson
    committed
    c7d09d9

Commits on Aug 19, 2024

  • log phasing baum welch.

    author
    Michael J. Wilson
    committed
    fbfe56b

  • fix

    author
    Michael J. Wilson
    committed
    8969c35

  • log initial alpha and tau

    author
    Michael J. Wilson
    committed
    726bc11

  • fix

    author
    Michael J. Wilson
    committed
    6f85e89

  • fix

    author
    Michael J. Wilson
    committed
    160ca9c

  • fix

    author
    Michael J. Wilson
    committed
    4a8103f

  • fix

    author
    Michael J. Wilson
    committed
    575ca76

  • fix

    author
    Michael J. Wilson
    committed
    75a9132

  • fix

    author
    Michael J. Wilson
    committed
    35ee342

Commits on Aug 20, 2024

Commits on Aug 26, 2024

  • ABC for emission models

    author
    Michael J. Wilson
    committed
    9ac416b

  • abc for emission models

    author
    Michael J. Wilson
    committed
    2bd629d

  • fix

    author
    Michael J. Wilson
    committed
    d4a0599

  • fixes

    author
    Michael J. Wilson
    committed
    431936c

  • fix

    author
    Michael J. Wilson
    committed
    bed12f1

  • fix chain logging

    author
    Michael J. Wilson
    committed
    ef27f84

  • fix

    author
    Michael J. Wilson
    committed
    22bceb7

  • gzip chains

    author
    Michael J. Wilson
    committed
    5787061

  • fix

    author
    Michael J. Wilson
    committed
    16f10e1

  • fix

    author
    Michael J. Wilson
    committed
    0424169

  • update instance counts.

    author
    Michael J. Wilson
    committed
    207e873

  • fix

    author
    Michael J. Wilson
    committed
    f945854

  • fix

    author
    Michael J. Wilson
    committed
    1613259

  • fix

    author
    Michael J. Wilson
    committed
    2218ebf

  • fix

    author
    Michael J. Wilson
    committed
    37eee03

  • cleanup before adding ARI for HMM states.

    author
    Michael J. Wilson
    committed
    9591ccc

  • precision on likelihood chain

    author
    Michael J. Wilson
    committed
    af2fa1a

  • fix

    author
    Michael J. Wilson
    committed
    8416be5

  • add HMM ARI

    author
    Michael J. Wilson
    committed
    9882e5e

  • fix

    author
    Michael J. Wilson
    committed
    0febc15

  • fix

    author
    Michael J. Wilson
    committed
    e0c3712

  • fix

    author
    Michael J. Wilson
    committed
    ec676e6

  • fix

    author
    Michael J. Wilson
    committed
    1b56487

  • fix

    author
    Michael J. Wilson
    committed
    2977647

  • make parent dirs for chains

    author
    Michael J. Wilson
    committed
    ea01b9e

  • fix

    author
    Michael J. Wilson
    committed
    890d4a7

  • add hamming distances

    author
    Michael J. Wilson
    committed
    4a1039c

  • fixes

    author
    Michael J. Wilson
    committed
    ec8881b

  • add # of states for hamming.

    author
    Michael J. Wilson
    committed
    d883c34

  • fix

    author
    Michael J. Wilson
    committed
    6f66d31

  • fix increment bug.

    author
    Michael J. Wilson
    committed
    28b0b81

  • fix

    author
    Michael J. Wilson
    committed
    3463cc3

  • Merge pull request #10 from michaelJwilson/main_logged_verbose_abc

    Congm12Congm12
    authored
    15de4a7

Commits on Sep 2, 2024

  • remove examples

    author
    Cong Ma
    committed
    5c95c47