Repositories list

• training-environment

  Public
  Shell

  •

  MIT License

  •22 forks•22 stars•33 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• support-docs

  Public
  NeSI Mkdocs based support pages.

  HTML

  •

  GNU General Public License v3.0

  •88 forks•1111 stars•3535 issues•66 pull requests•Updated Jul 14, 2026Jul 14, 2026

• modules-list

  Public
  List of all the NeSI environment modules

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 14, 2026Jul 14, 2026

• agdr-docs

  Public
  AGDR documentation pages for https://data.agdr.org.nz/.

  genomicsgaaotearoa+ 1

  genomicsgaaotearoanesi

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jul 13, 2026Jul 13, 2026

• OpenComposer

  Public
  Job submission application on Open OnDemand

  HTML

  •

  MIT License

  •1414 forks•00 stars•00 issues•00 pull requests•Updated Jul 13, 2026Jul 13, 2026

• opt-nesi-bin

  Public
  Repo containg user facing tools located in `/opt/nesi/bin`

  Shell

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•1010 issues•00 pull requests•Updated Jul 3, 2026Jul 3, 2026

• training-environment-rstudio-rnaseq-app

  Public
  Jupyter Notebook

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• hpc-intro

  Public
  Lesson materials for an Introduction to High Performance Computing in the tradition of Software Carpentry

  Vim Snippet

  •

  Other

  •160160 forks•22 stars•33 issues•00 pull requests•Updated Jul 2, 2026Jul 2, 2026

• spack-conf

  Public
  Spack configs and other files/code we may want to version/track

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 29, 2026Jun 29, 2026

• spack-specs

  Public
  Spack package spec files managed by NeSI

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 25, 2026Jun 25, 2026

• nesi-wordlist

  Public
  A user wordlist for deployment in multiple formats.

  Python

  •00 forks•00 stars•33 issues•11 pull request•Updated Jun 24, 2026Jun 24, 2026

• Apptainer-def-files

  Public
  Apptainer definition files for centrally maintained container images

  C

  •

  GNU General Public License v3.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 23, 2026Jun 23, 2026

• nesi-ood-jupyterlab-app

  Public
  OOD JupyterLab app for Analysis Environment (Beta)

  HTML

  •00 forks•00 stars•11 issue•00 pull requests•Updated Jun 22, 2026Jun 22, 2026

• nesi_jupyter_helpers

  Public
  Tools to help users of jupyter.nesi.org.nz

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 22, 2026Jun 22, 2026

• reannz-containers-workshop

  Public
  Containers Workshop for REANNZ

  HTML

  •

  GNU General Public License v3.0

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 17, 2026Jun 17, 2026

• eri-easyconfigs

  Public
  AgR eRI cluster easybuild easyconfig files

  00 forks•00 stars•22 issues•00 pull requests•Updated Jun 16, 2026Jun 16, 2026

• training-environment-jupyter-ml102-app

  Public
  HTML

  •

  MIT License

  •11 fork•00 stars•11 issue•00 pull requests•Updated Jun 16, 2026Jun 16, 2026

• ml102_workshop

  Public
  ML102 workshop - Image analysis

  Jupyter Notebook

  •55 forks•66 stars•11 issue•00 pull requests•Updated Jun 16, 2026Jun 16, 2026

• nesi-ood-pluto-app

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 15, 2026Jun 15, 2026

• training-environment-jupyter-introduction-shell-app

  Public
  NeSI training environment Introduction to Shell for Bioinformatics app

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 28, 2026May 28, 2026

• opt-nesi-sbin

  Public
  Scripts for REANNZ staff (not FHS compliant).

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-rstudio-server-app

  Public
  OOD RStudio-server for app on Analysis Environment (Beta)

  HTML

  •

  MIT License

  •11 fork•00 stars•55 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-codeserver-app

  Public
  HTML

  •

  MIT License

  •11 fork•00 stars•22 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-virtualdesktop-app

  Public
  Shell

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-fluent-server-app

  Public
  OOD app for fluen

  HTML

  •

  MIT License

  •00 forks•00 stars•11 issue•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-ase-app

  Public
  The Atomic Simulation Environment (ASE) is a set of tools and Python modules for setting up, manipulating, running, visualizing and analyzing atomistic simulati…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-Avogadro2-app

  Public
  Avogadro is an advanced molecule editor and visualizer designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-marimo-app

  Public
  Marimo is an open-source reactive notebook for Python — reproducible, git-friendly, SQL built-in, executable as a script, and shareable as an app.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-matlab-server-app

  Public
  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026

• nesi-ood-pymol-app

  Public
  yMOL is a widely used, open-source molecular visualization system primarily designed for viewing and analyzing the 3D structures of proteins, nucleic acids (DNA…

  Shell

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2026May 21, 2026