Repositories list

• SerotoninStimulation

  Public
  Python

  •11 fork in mainenlab/SerotoninStimulation•00 stars in mainenlab/SerotoninStimulation•00 issues in mainenlab/SerotoninStimulation•00 pull requests in mainenlab/SerotoninStimulation•Updated Sep 14, 2026Sep 14, 2026

• mainenlab.github.io

  Public
  HTML

  •00 forks in mainenlab/mainenlab.github.io•00 stars in mainenlab/mainenlab.github.io•00 issues in mainenlab/mainenlab.github.io•00 pull requests in mainenlab/mainenlab.github.io•Updated Jul 31, 2026Jul 31, 2026

• mouse-lsd

  Public
  Neural and behavioral analyses for the IBL Psychedelics dataset

  Jupyter Notebook

  •44 forks in mainenlab/mouse-lsd•00 stars in mainenlab/mouse-lsd•00 issues in mainenlab/mouse-lsd•00 pull requests in mainenlab/mouse-lsd•Updated May 25, 2026May 25, 2026

• human-foraging

  Public
  An inference task. Try it out at

  MIT License

  •11 fork in mainenlab/human-foraging•00 stars in mainenlab/human-foraging•00 issues in mainenlab/human-foraging•00 pull requests in mainenlab/human-foraging•Updated Mar 23, 2026Mar 23, 2026

• ONE

  Public
  Open Neurophysiology Environment

  Python

  •

  MIT License

  •88 forks in mainenlab/ONE•00 stars in mainenlab/ONE•00 issues in mainenlab/ONE•00 pull requests in mainenlab/ONE•Updated Nov 9, 2022Nov 9, 2022

• spikeinterface

  Public
  A Python-based module for creating flexible and robust spike sorting pipelines.

  Python

  •

  MIT License

  •284284 forks in mainenlab/spikeinterface•00 stars in mainenlab/spikeinterface•00 issues in mainenlab/spikeinterface•00 pull requests in mainenlab/spikeinterface•Updated Oct 24, 2022Oct 24, 2022

• pyopenephys

  Public
  Python reader for open ephys

  Python

  •

  GNU General Public License v3.0

  •99 forks in mainenlab/pyopenephys•00 stars in mainenlab/pyopenephys•00 issues in mainenlab/pyopenephys•00 pull requests in mainenlab/pyopenephys•Updated Oct 24, 2022Oct 24, 2022

• python-neo

  Public
  Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •284284 forks in mainenlab/python-neo•00 stars in mainenlab/python-neo•00 issues in mainenlab/python-neo•00 pull requests in mainenlab/python-neo•Updated Oct 24, 2022Oct 24, 2022

• spikeextractors

  Public archive
  Python-based module for extracting from, converting between, and interfacing with many common file formats in extracellular recording.

  Python

  •

  MIT License

  •4747 forks in mainenlab/spikeextractors•00 stars in mainenlab/spikeextractors•00 issues in mainenlab/spikeextractors•00 pull requests in mainenlab/spikeextractors•Updated Oct 18, 2022Oct 18, 2022

• behavenet

  Public
  Toolbox for analyzing behavioral videos and neural activity

  Python

  •

  MIT License

  •1717 forks in mainenlab/behavenet•00 stars in mainenlab/behavenet•00 issues in mainenlab/behavenet•00 pull requests in mainenlab/behavenet•Updated Jun 21, 2022Jun 21, 2022

• DeepLabCut-core

  Public
  Headless DeepLabCut (no GUI support)

  Python

  •

  GNU Lesser General Public License v3.0

  •1414 forks in mainenlab/DeepLabCut-core•00 stars in mainenlab/DeepLabCut-core•00 issues in mainenlab/DeepLabCut-core•00 pull requests in mainenlab/DeepLabCut-core•Updated Feb 23, 2021Feb 23, 2021

• Kilosort

  Public
  Fast spike sorting with drift correction for up to a thousand channels

  MATLAB

  •

  GNU General Public License v2.0

  •297297 forks in mainenlab/Kilosort•00 stars in mainenlab/Kilosort•00 issues in mainenlab/Kilosort•00 pull requests in mainenlab/Kilosort•Updated Feb 21, 2021Feb 21, 2021

• ibllib

  Public
  IBL core shared libraries

  Python

  •

  MIT License

  •4040 forks in mainenlab/ibllib•00 stars in mainenlab/ibllib•00 issues in mainenlab/ibllib•00 pull requests in mainenlab/ibllib•Updated Feb 13, 2021Feb 13, 2021

• mainenmood

  Public
  GDScript

  •00 forks in mainenlab/mainenmood•00 stars in mainenlab/mainenmood•00 issues in mainenlab/mainenmood•00 pull requests in mainenlab/mainenmood•Updated Feb 10, 2021Feb 10, 2021

• gpu-jupyter

  Public
  Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

  Jupyter Notebook

  •

  Apache License 2.0

  •239239 forks in mainenlab/gpu-jupyter•00 stars in mainenlab/gpu-jupyter•00 issues in mainenlab/gpu-jupyter•00 pull requests in mainenlab/gpu-jupyter•Updated Jan 28, 2021Jan 28, 2021

• analysis-tools

  Public
  Code for reading data saved by the Open Ephys GUI

  C

  •176176 forks in mainenlab/analysis-tools•00 stars in mainenlab/analysis-tools•00 issues in mainenlab/analysis-tools•00 pull requests in mainenlab/analysis-tools•Updated Sep 20, 2020Sep 20, 2020

• pymata-aio

  Public
  This is the second generation PyMata client.

  Python

  •

  GNU Affero General Public License v3.0

  •4949 forks in mainenlab/pymata-aio•11 star in mainenlab/pymata-aio•00 issues in mainenlab/pymata-aio•00 pull requests in mainenlab/pymata-aio•Updated Feb 6, 2020Feb 6, 2020

• arduino

  Public
  Firmata firmware for Arduino

  C++

  •

  GNU Lesser General Public License v2.1

  •517517 forks in mainenlab/arduino•11 star in mainenlab/arduino•00 issues in mainenlab/arduino•00 pull requests in mainenlab/arduino•Updated Jan 20, 2020Jan 20, 2020

• Docker4DeepLabCut2.0

  Public
  Docker container for running DeepLabCut2.0 (linux support only)

  Jupyter Notebook

  •2626 forks in mainenlab/Docker4DeepLabCut2.0•11 star in mainenlab/Docker4DeepLabCut2.0•00 issues in mainenlab/Docker4DeepLabCut2.0•00 pull requests in mainenlab/Docker4DeepLabCut2.0•Updated Apr 4, 2019Apr 4, 2019

• DocumentationTemplate

  Public
  11 fork in mainenlab/DocumentationTemplate•00 stars in mainenlab/DocumentationTemplate•00 issues in mainenlab/DocumentationTemplate•00 pull requests in mainenlab/DocumentationTemplate•Updated Mar 8, 2019Mar 8, 2019

• Rigbox

  Public
  A MATLAB toolbox for running experiments and managing data

  MATLAB

  •2020 forks in mainenlab/Rigbox•00 stars in mainenlab/Rigbox•00 issues in mainenlab/Rigbox•00 pull requests in mainenlab/Rigbox•Updated Apr 23, 2018Apr 23, 2018

• AMS_AS5048B

  Public
  Arduino Lib for AMS AS5048B I2C - 14-bit magnetic rotary position sensor

  C++

  •

  Other

  •3131 forks in mainenlab/AMS_AS5048B•11 star in mainenlab/AMS_AS5048B•00 issues in mainenlab/AMS_AS5048B•00 pull requests in mainenlab/AMS_AS5048B•Updated Mar 9, 2018Mar 9, 2018

• TheSpinnerGame

  Public
  The Spinner Game's Home

  GDScript

  •

  MIT License

  •22 forks in mainenlab/TheSpinnerGame•00 stars in mainenlab/TheSpinnerGame•00 issues in mainenlab/TheSpinnerGame•00 pull requests in mainenlab/TheSpinnerGame•Updated Nov 22, 2017Nov 22, 2017

• hidden_state_task

  Public
  GDScript

  •11 fork in mainenlab/hidden_state_task•00 stars in mainenlab/hidden_state_task•00 issues in mainenlab/hidden_state_task•00 pull requests in mainenlab/hidden_state_task•Updated Nov 17, 2017Nov 17, 2017

• signals

  Public
  Simple stimulus presentation for your experiments

  MATLAB

  •

  Apache License 2.0

  •1010 forks in mainenlab/signals•00 stars in mainenlab/signals•00 issues in mainenlab/signals•00 pull requests in mainenlab/signals•Updated Aug 5, 2017Aug 5, 2017