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    12 repositories

    • MLDynamicMetabolicControl

      Public
      Dynamic Metabolic Control using Neural Net Surrogates
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Oct 14, 2026Oct 14, 2026

    • emma-thesis

      Public
      Code for Emma's Bachelor's thesis.
      HTML
      •0•0•0•0•Updated Sep 4, 2026Sep 4, 2026

    • Cobra2D

      Public
      Packet to simplify the creation of COBRApy models, which consist of sub-models with specific periods of time. Also contains saving and visualization methods of …
      Python
      •0•1•0•5•Updated Jul 28, 2026Jul 28, 2026

    • webKinPred

      Public
      Python
      •6•0•0•0•Updated May 27, 2026May 27, 2026

    • cobramod

      Public
      CobraMod is a Python 3 open-source package which enables modifying and extending genome-scale metabolic models with metabolic pathway information from various m…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•19•1•1•Updated May 11, 2026May 11, 2026

    • C3-C4_spectrum

      Public
      Metabolic modeling links leaf anatomy to environment-specific benefits on the C3-C4 spectrum
      Jupyter Notebook
      •0•0•0•0•Updated Apr 30, 2026Apr 30, 2026

    • CataPro

      Public
      A generalized enzyme kinetics parameter prediction model.
      Python
      •
      MIT License
      •22•0•0•0•Updated Jul 4, 2025Jul 4, 2025

    • mmon-gcm

      Public
      MMON-GCM
      HTML
      •
      Apache License 2.0
      •0•1•0•0•Updated Jul 2, 2024Jul 2, 2024

    • escher-legacy

      Public
      Build, share, and embed visualizations of metabolic pathways.
      JavaScript
      •
      Other
      •80•0•0•1•Updated Feb 19, 2024Feb 19, 2024

    • Multiscale_Modelling_Phaeodactylum

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Feb 9, 2024Feb 9, 2024

    • Anatomical_Constraints_C4

      Public
      This repository stores the code and files associated with the "Development and analysis of mathematical models to study metabolic constraints and capacities in …
      Jupyter Notebook
      •1•1•0•0•Updated Nov 23, 2023Nov 23, 2023

    • Lectures

      Public
      Digital component of the teaching activities of the "Metabolic Reconstruction and Flux Modelling" research group.
      0•0•0•0•Updated Feb 15, 2023Feb 15, 2023
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