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Update Genrich module input tuple and argument #3720

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Merged
samuelruizperez merged 18 commits into from
Oct 18, 2023
Merged

Update Genrich module input tuple and argument #3720

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4316f03
Added treat & control lists inputs and SE modifier
samuelruizperez Aug 8, 2023
32ea406
Added treat & control lists inputs and SE modifier
samuelruizperez Aug 8, 2023
58e0bf7
Genrich: Added multiple reps and SE modifier
samuelruizperez Aug 10, 2023
195f35e
Genrich: Added multiple reps and SE modifier 2
samuelruizperez Aug 10, 2023
5179743
Genrich: simplified layout definition
samuelruizperez Aug 10, 2023
e3256a6
Merge branch 'master' into master
samuelruizperez Aug 10, 2023
7ce8071
Merge branch 'master' into master
samuelruizperez Aug 11, 2023
e7a3b1a
Merge branch 'master' into master
samuelruizperez Aug 14, 2023
6715588
Merge branch 'master' into master
SPPearce Aug 16, 2023
4763305
Merge branch 'master' into master
samuelruizperez Aug 30, 2023
a8c1f0b
Merge branch 'master' into master
samuelruizperez Oct 16, 2023
c56c22b
Removing value channels
samuelruizperez Oct 16, 2023
ef1518e
Line up commas
SPPearce Oct 17, 2023
384f4f9
Align commas
SPPearce Oct 17, 2023
5ac97dc
Increase test -p to avoid empty file
samuelruizperez Oct 17, 2023
d7b5bc3
Merge branch 'master' into master
samuelruizperez Oct 17, 2023
cf1e0c3
Merge branch 'master' into master
FriederikeHanssen Oct 18, 2023
58ce73e
Merge branch 'master' into master
samuelruizperez Oct 18, 2023
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2 changes: 1 addition & 1 deletion tests/modules/nf-core/genrich/nextflow.config
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ process {
withName: GENRICH_ALL {
ext.args = {
[
"-p 0.1",
"-p 0.9",
"-k ${meta.id}.pileup.bedGraph",
"-f ${meta.id}.pvalues.bedGraph",
"-b ${meta.id}.intervals.bed",
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4 changes: 2 additions & 2 deletions tests/modules/nf-core/genrich/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -35,11 +35,11 @@
- path: output/genrich/test.intervals.bed
md5sum: 4bea65caa3f4043d703af4b57161112e
- path: output/genrich/test.narrowPeak
md5sum: d41d8cd98f00b204e9800998ecf8427e
md5sum: 82bc06c2e44e4d91152a6ac6557a2c6e

@JoseEspinosa JoseEspinosa Oct 18, 2023

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Even better 😍

- path: output/genrich/test.pileup.bedGraph
md5sum: 03e53848de695b5794f32f15b2709203
- path: output/genrich/test.pvalues.bedGraph
md5sum: b14feef34b6d2379a173a734ca963cde
md5sum: 21ad9731340e9bedc30c4d34f7db7751
- path: output/genrich/versions.yml

- name: genrich test_genrich_blacklist
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