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count mixed SE/PE libraries per-batch instead of pinning subread - #452

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NicoDeVeaux wants to merge 18 commits into
nf-core:devfrom
NicoDeVeaux:fix/featurecounts-mixed-se-pe
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count mixed SE/PE libraries per-batch instead of pinning subread#452
NicoDeVeaux wants to merge 18 commits into
nf-core:devfrom
NicoDeVeaux:fix/featurecounts-mixed-se-pe

Count read pairs, not reads, in paired-end featureCounts

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3 errors
docker | 25.10.4 | 7/7
failed Aug 23, 2026 in 15m 28s