nf-core modules update - #448

Open

NicoDeVeaux wants to merge 11 commits into

nf-core:devfrom

NicoDeVeaux:nf-core-modules-update

Commits on Jul 26, 2026

Update nf-core modules and subworkflows to their latest versions
NicoDeVeaux
committed
156defd
fix: add read groups to chromap alignments
NicoDeVeaux
committed
579e38f
fix: pin subread to 2.0.1 for mixed single-end/paired-end peak counts
NicoDeVeaux
committed
3812c92
fix: sort consensus featureCounts BAM inputs for deterministic column order
NicoDeVeaux
committed
a7d2a31
test: regenerate pipeline snapshots and ignore timestamped MarkDuplicates metrics
NicoDeVeaux
committed
dbfcabf
chore: apply the nf-core/tools 4.0.3 template update
NicoDeVeaux
committed
e1dc032
docs: record the module-update fixes in the changelog
NicoDeVeaux
committed
b04867a

Commits on Jul 29, 2026

Commits on Aug 3, 2026

fix: regenerate ro-crate-metadata.json against the real pipeline docs
NicoDeVeaux
committed
250767f

Commits on Aug 21, 2026

Merge branch 'dev' into nf-core-modules-update

NicoDeVeaux
and
claude
committed
5caa50b