Update GIN references to point to SWC hosted system

docs/source/conf.py

@@ -78,6 +78,7 @@
 ]
 linkcheck_ignore = [
     "https://gin.g-node.org/",  # GIN is often slow/unreachable and times out
+    "https://gin.swc.ucl.ac.uk/",
     "https://www.cambridgeneurotech.com",  # rejects link checker requests (HTTP 415)
     "https://opensource.org",
     "https://www.incf.org/recommendations-gsoc-contributors",

docs/source/howto/open_science/Data-sharing.md

@@ -35,7 +35,7 @@ There are [many repositories](repo-table) that will accept the types of data gen
 Use the existing [SWC section of the UCL FigShare instance](https://rdr.ucl.ac.uk/The_Sainsbury_Wellcome_Centre). This is easy to use, and is supported centrally by UCL
 
 **For larger datasets:**
-Create a GIN repository, ideally within the [SWC organisation](https://gin.g-node.org/SainsburyWellcomeCentre). GIN uses Git and provides a versioning system, making it particularly well suited for ongoing research projects.
+Create a GIN repository, ideally within the [SWC organisation](https://gin.swc.ucl.ac.uk/SainsburyWellcomeCentre). GIN uses Git and provides a versioning system, making it particularly well suited for ongoing research projects.
 
 **Specific modalities:**
 In some cases, there may be a modality or field-specific repository that would be best suited for the data (or mandated by the publisher), some examples include:
@@ -61,7 +61,7 @@ If you have any technical questions about sharing data or code, please contact a
 | figshare                           | https://rdr.ucl.ac.uk/The_Sainsbury_Wellcome_Centre | Anything                                                                                              |
 | Zenodo                             | https://zenodo.org/                                 | Anything                                                                                              |
 | Dryad                              | https://datadryad.org                               | Anything                                                                                              |
-| GIN (German Neuroinformatics Node) | https://gin.g-node.org/                             | Neuroscience                                                                                          |
+| GIN (SWC)                          | https://gin.swc.ucl.ac.uk/                          | Neuroscience                                                                                          |
 | EBRAINS                            | https://ebrains.eu/service/share-data               | Neuroscience                                                                                          |
 | Open Source Brain                  | https://www.v2.opensourcebrain.org/                 | Any neuroscience data (data must be hosted elsewhere)                                                 |
 | Brain Image Library                | http://www.brainimagelibrary.org/                   | Large brain image datasets                                                                            |

docs/source/howto/open_science/GIN-repositories.md

@@ -1,7 +1,7 @@
 (target-create-gin-repo)=
 # Create a GIN repository for your dataset
 
-[GIN](https://gin.g-node.org/G-Node/Info/wiki) (hosted by the German Neuroinformatics Node) is a free and open data management system designed for neuroscientific data.
+[GIN](https://gin.swc.ucl.ac.uk/) (hosted by the Sainsbury Wellcome Centre) is a free and open data management system designed for neuroscientific data.
 
 It is web-accessible, based on [`git`](https://git-scm.com/) and [`git-annex`](https://git-annex.branchable.com/), and allows you to keep your data in sync, backed up and easily accessible.
 
@@ -12,10 +12,10 @@ Below we explain the main user workflows in GIN.
 
 We need to do these steps only the first time we use GIN's command-line interface (CLI) on our machine.
 
-1. Create [a GIN account](https://gin.g-node.org/user/sign_up).
+1. Create [a GIN account](https://gin.swc.ucl.ac.uk/user/sign_up).
 2. [Download GIN CLI](https://gin.g-node.org/G-Node/Info/wiki/GIN+CLI+Setup#setup-gin-client) and set it up by running:
    ```
-   $ gin login
+   $ gin login --server https://gin.swc.ucl.ac.uk
    ```
    You will be prompted for your GIN username and password.
 3. Confirm that everything is working properly by typing:
@@ -32,7 +32,7 @@ To create a local and a remote GIN repository, follow these steps:
    Before running any `gin` commands, make sure you are logged in to your account by running:
 
    ```
-   $ gin login
+   $ gin login --server https://gin.swc.ucl.ac.uk
    ```
 
 :::{tip}
@@ -54,7 +54,7 @@ In Unix-like systems (Ubuntu, MacOS), you may need `sudo` permissions for some o
 
       <details><summary> <b> OR alternatively: </b> </summary>
 
-      Create a repository in the GIN server [from the browser](https://gin.g-node.org/repo/create), and clone (retrieve) it to your local workspace:
+      Create a repository in the GIN server [from the browser](https://gin.swc.ucl.ac.uk/repo/create), and clone (retrieve) it to your local workspace:
 
       ```
       $ gin get <username>/<remote-repository-name>
@@ -295,7 +295,7 @@ Here is a simple example of how to download a dataset from a GIN repository usin
 import pooch
 
 filepath = pooch.retrieve(
-    url="https://gin.g-node.org/<username>/<repository>/raw/main/<file>",
+    url="https://gin.swc.ucl.ac.uk/<username>/<repository>/raw/main/<file>",
     known_hash=None,
     path="/home/<user>/downloads", # this is where the file will be saved
     progressbar=True,
@@ -305,7 +305,7 @@ filepath = pooch.retrieve(
 :::{tip}
 A common mistake is to use the URL of the GIN repository's webpage instead of the URL of the raw file.
 
-The URL of the raw file will have `/raw/` in its path. For example, the URL of the raw file `image.png` in the repository `my-repo` under the user `my-user` should be `https://gin.g-node.org/my-user/my-repo/raw/main/image.png`.
+The URL of the raw file will have `/raw/` in its path. For example, the URL of the raw file `image.png` in the repository `my-repo` under the user `my-user` should be `https://gin.swc.ucl.ac.uk/my-user/my-repo/raw/main/image.png`.
 
 The easiest way to get the raw URL of a file is to:
 1. Navigate to the specific file in the GIN repository,