Tiled access

.github/workflows/test-lint.yml

@@ -5,7 +5,7 @@ on: pull_request
 jobs:
   test-and-lint:
     runs-on: ubuntu-latest
-      
+
     steps:
       - uses: actions/checkout@v4
       - name: Set up Python 3.11

.pre-commit-config.yaml

@@ -12,12 +12,6 @@ repos:
       - id: check-symlinks
       - id: check-yaml
       - id: debug-statements
-  - repo: https://github.com/gitguardian/ggshield
-    rev: v1.25.0
-    hooks:
-      - id: ggshield
-        language_version: python3
-        stages: [commit]
   # Using this mirror lets us use mypyc-compiled black, which is about 2x faster
   - repo: https://github.com/psf/black-pre-commit-mirror
     rev: 24.2.0

_tests/conftest.py

@@ -1,5 +1,3 @@
-import os
-
 import numpy as np
 import pytest
 import yaml

mlex_dlsia/utils/tiled.py

@@ -119,9 +119,13 @@ def allocate_array_space(
         metadata=metadata,
         key=array_name,
     )
+    # match the new container and new array access tags to the original data_client
+    copy_tiled_access_info(tiled_dataset.data_client, last_container)
+    copy_tiled_access_info(tiled_dataset.data_client, array_client)
 
     logging.info(
-        f"Result space allocated in Tiled and segmentation will be saved in {array_client.uri}."
+        f"Result space allocated in Tiled and segmentation will be \n"
+        f"saved in {array_client.uri} with access_tags {array_client.access_blob.get('tags')}."
     )
 
     return array_client
@@ -148,3 +152,20 @@ def prepare_tiled_containers(io_parameters, dataset, network_name):
     )
     logging.info("Tiled segmentation result space allocated successfully.")
     return seg_client
+
+
+def copy_tiled_access_info(source_client, target_client):
+    """
+    This function copies the access information from a source Tiled URI to a target Tiled client.
+    Input:
+        source_uri: str, The URI of the source Tiled resource.
+        target_client: Tiled client object, The target Tiled client to copy access info to.
+    Output:
+        None
+    """
+    access_blob = source_client.access_blob
+    if access_blob and access_blob.get("tags") is not None:
+        target_client.replace_metadata(access_tags=access_blob["tags"])
+    logging.info(
+        f"Tiled access information copied successfully {source_client.access_blob}."
+    )

pyproject.toml

@@ -16,7 +16,7 @@ name = "mlex_dlsia"
 version = "0.2.0"
 description = "DLSIA models for segmentation in MLExchange"
 readme = { file = "README.md", content-type = "text/markdown" }
-requires-python = ">=3.11"
+requires-python = ">=3.11, <=3.12"
 
 dependencies = [
   "numpy==1.26.4",