All pull requests

Pull requests

• Bump pyasn1 from 0.6.4 to 0.6.5

  dependenciespython:uv
  #3594·dependabot[bot] opened Nov 4, 2026Bot·

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• Map QuantityValue to schema:QuantitativeValue, which schema.org defines

  #3591·turbomam opened Nov 3, 2026Member·

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• Expand QUDT CURIEs to namespaces QUDT still serves

  #3590·turbomam opened Nov 3, 2026Member·

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• Remove the unused id_locus setting

  #3589·turbomam opened Nov 3, 2026Member·

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  2

• Use static version in pyproject.toml with release coordination script

  #3588·pkalita-lbl opened Nov 3, 2026Collaborator·

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  18

  

• Strip anchors from MIxS structured patterns before linkml-runtime 1.12 adds its own

  #3587·turbomam opened Nov 3, 2026Member·

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• Add NovaSeq X Plus PV to InstrumentModelEnum

  #3586·sujaypatil96 opened Nov 3, 2026Collaborator·

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• Create pha4ge_wastewater subset and add elements (slots, enums) to it

  #3584·sujaypatil96 opened Oct 30, 2026Collaborator·

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• NEEDS MIGRATOR: Fix the EFO and MCO prefix expansions

  #3573·turbomam opened Oct 20, 2026Member·

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• Report misspellings in schema source and docs with typos

  #3543·turbomam opened Oct 15, 2026Member·

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• Validate example data against the source schema, not the committed artifact

  #3518·turbomam opened Oct 13, 2026Member·

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• Don't allow element names that are spelled or pronounced alike

  #3505·turbomam opened Oct 8, 2026Member·

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  27

  

• Report files under assets/ that nothing uses, and fail CI on new ones

  #3423·turbomam opened Sep 16, 2026Member·

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  26

• Attach ontology_class_set to Database and add the missing ontology_relation_set slot

  #3408·turbomam opened Sep 11, 2026Member·

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  7

• Move provenance_metadata onto NamedThing

  do not merge
  #3231·turbomam opened Jun 26, 2026Member·

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• Draft ProvenanceObject class and has_instance_provenance slot (#3085)

  do not merge
  #3086·turbomam opened May 20, 2026Member·

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• Define ProcessedSample structurally as MaterialProcessing output (#3051)

  #3081·turbomam opened May 18, 2026Member·

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• Add first_of_class_in_chain convenience flag on ProcessedSample, OrganismSample, and DataObject (#3050)

  do not merge
  #3080·turbomam opened May 18, 2026Member·

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• Draft: SlotLevelProvenance class + raw-vs-coerced pattern doc

  do not merge
  #3071·turbomam opened May 14, 2026Member·

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• Draft: Define GeoLocationNameValue class for structured geo_loc_name

  #2308·turbomam opened Dec 19, 2024Member·

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  14