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matinnuhamunada/README.md

Hi, I'm Matin 👋

CTO at Integrated Genome Factory | Assistant Professor at Universitas Gadjah Mada

I work where genomics meets software engineering: building sequencing and bioinformatics infrastructure in industry, and teaching bioinformatics, biotechnology, and computational biology at the Faculty of Biology, UGM.

🧬 What I do

  • 🏭 At IGF: I lead the technology behind our genome sequencing services, including data pipelines, compute infrastructure, and turning raw reads into results clients can use.
  • 🎓 At UGM: I teach bioinformatics, biotechnology, and systems biology, and I supervise students working on genomics and bioinformatics.
  • 🔬 Research interests: microbial genomics, biosynthetic gene clusters, pangenomics, and reproducible workflows.

🛠️ Projects

  • 💬 Ask me about BGCFlow, a systematic workflow for analysing biosynthetic gene clusters across large genome collections (pangenomes).
  • 🌱 Currently exploring agentic retrieval-augmented generation (RAG) and knowledge graphs to aid genome mining.

🧰 Toolbox

Python Snakemake dbt DuckDB Docker Linux

📫 Get in touch

Personal website Integrated Genome Factory LinkedIn

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  1. trycycler_snakemake_wrapper trycycler_snakemake_wrapper Public

    Snakemake implementation of https://github.com/rrwick/Trycycler

    Python 4

  2. 27255_week_11 27255_week_11 Public

    Course 27255 - Week 11 | Genome assembly & annotation practicals (https://matinnuhamunada.github.io/27255_week_11/)

    HTML

  3. SINTA_data_mining SINTA_data_mining Public

    Proyek iseng profiling peneliti life sciences di Indonesia dari http://sinta.ristekbrin.go.id/

    HTML