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  1. PIVOT PIVOT Public

    Platform for Interactive analysis and Visualization Of Transcriptomics data

    HTML 26 16

  2. VisCello VisCello Public

    Viscello for Visualization of Single Cell Data

    R 26 9

  3. VERSE VERSE Public

    A versatile and efficient RNA-Seq read counting tool

    C 16 3

  4. kidneycellexplorer kidneycellexplorer Public

    R 9 5

  5. nofold nofold Public

    Motif finder for RNA secondary structures

    Python 5 1

  6. aegle aegle Public

    2D segmentation and analysis pipeline for PhenoCycler images

    Python 3 3

Repositories

Showing 10 of 25 repositories
  • aegle Public

    2D segmentation and analysis pipeline for PhenoCycler images

    kimpenn/aegle's past year of commit activity
    Python 3 GPL-3.0 3 14 1 Updated Jul 13, 2026
  • abm Public

    Agent-based mitochondria mutation dynamics model.

    kimpenn/abm's past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 2, 2026
  • visium_mask_scripts Public
    kimpenn/visium_mask_scripts's past year of commit activity
    Python 0 0 0 0 Updated May 14, 2025
  • aegle_patch_viewer Public
    kimpenn/aegle_patch_viewer's past year of commit activity
    Python 0 0 0 0 Updated Apr 21, 2025
  • smito-analysis Public

    This repository contains code for SMITO data analysis

    kimpenn/smito-analysis's past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Feb 24, 2025
  • smito-pipeline Public

    Single-MITOchondrion (SMITO) SNV Pipeline

    kimpenn/smito-pipeline's past year of commit activity
    Shell 0 Artistic-2.0 0 0 0 Updated Feb 24, 2025
  • astrotypes-analysis Public

    This repository contains code for astrocyte subtypes data analysis.

    kimpenn/astrotypes-analysis's past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 0 0 0 Updated Feb 11, 2025
  • chex-analysis Public

    This repository contains code for CHEX-seq data analysis.

    kimpenn/chex-analysis's past year of commit activity
    R 0 MPL-2.0 0 0 0 Updated Jan 31, 2025
  • chex-seq Public

    This is the computational pipeline for CHEX-seq data

    kimpenn/chex-seq's past year of commit activity
    Perl 0 MPL-2.0 0 0 0 Updated Jan 31, 2025
  • track-image-experiments Public

    Track metadata for imaging experiments

    kimpenn/track-image-experiments's past year of commit activity
    JavaScript 0 GPL-2.0 0 0 0 Updated Jan 17, 2025
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