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Automated dependency upgrades #966

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16b1a39
update dependencies for ubuntu-latest/py3.11
invalid-email-address Sep 21, 2026
d93634a
update dependencies for ubuntu-latest/py3.12
invalid-email-address Sep 21, 2026
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125 changes: 65 additions & 60 deletions requirements/ubuntu-latest_py3.11.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -2,17 +2,17 @@
# This file is autogenerated by pip-compile with Python 3.11
# by the following command:
#
# pip-compile --all-extras --output-file=requirements/ubuntu-latest_py3.11.txt
# pip-compile --all-extras --no-index --output-file=requirements/ubuntu-latest_py3.11.txt
#
aflow==0.0.11
# via
# matminer
# matminer (pyproject.toml)
alabaster==1.0.0
# via sphinx
annotated-doc==0.0.4
annotated-doc==0.0.5
# via typer
ase==3.28.0
ase==3.29.0
# via
# aflow
# dscribe
Expand All @@ -26,31 +26,31 @@ attrs==26.1.0
# referencing
babel==2.18.0
# via sphinx
beautifulsoup4==4.14.3
beautifulsoup4==4.15.0
# via aflow
bibtexparser==1.4.4
# via pymatgen-core
black==26.3.1
black==26.5.1
# via
# matminer
# matminer (pyproject.toml)
certifi==2026.2.25
certifi==2026.7.22
# via requests
cffi==2.0.0
cffi==2.1.1
# via cryptography
charset-normalizer==3.4.7
charset-normalizer==3.5.1
# via requests
citrination-client==6.5.1
# via
# matminer
# matminer (pyproject.toml)
click==8.3.2
# via
# black
# typer
click==8.5.0
# via black
cloudpickle==3.1.2
# via joblib
contourpy==1.3.3
# via matplotlib
coverage[toml]==7.13.5
coverage[toml]==7.16.1
# via
# coveralls
# matminer
Expand All @@ -60,7 +60,7 @@ coveralls==4.1.0
# via
# matminer
# matminer (pyproject.toml)
cryptography==46.0.7
cryptography==50.0.1
# via
# globus-sdk
# pyjwt
Expand All @@ -82,24 +82,24 @@ flake8==7.3.0
# via
# matminer
# matminer (pyproject.toml)
fonttools==4.62.1
fonttools==4.65.0
# via matplotlib
globus-sdk==3.65.0
# via
# fair-research-login
# mdf-forge
# mdf-toolbox
httplib2==0.31.2
httplib2==0.32.0
# via
# matminer
# matminer (pyproject.toml)
idna==3.11
idna==3.20
# via requests
imagesize==2.0.0
imagesize==2.0.1
# via sphinx
iniconfig==2.3.0
# via pytest
isort==8.0.1
isort==9.0.1
# via pylint
jinja2==3.1.6
# via
Expand All @@ -109,7 +109,7 @@ jmespath==1.1.0
# via
# matminer
# matminer (pyproject.toml)
joblib==1.5.3
joblib==1.6.0
# via
# dscribe
# pymatgen-core
Expand All @@ -121,19 +121,19 @@ jsonschema==4.26.0
# mdf-toolbox
jsonschema-specifications==2025.9.1
# via jsonschema
kiwisolver==1.5.0
kiwisolver==1.5.1
# via matplotlib
llvmlite==0.47.0
llvmlite==0.49.0
# via numba
lxml==6.1.0
lxml==6.1.3
# via pymatgen-core
markdown-it-py==4.0.0
markdown-it-py==4.2.0
# via rich
markupsafe==3.0.3
# via jinja2
matminer[aflow,citrine,describe,dev,mdfforge,mpds] @ file:///home/runner/work/matminer/matminer
# via matminer (pyproject.toml)
matplotlib==3.10.8
matplotlib==3.11.2
# via
# ase
# pymatgen-core
Expand All @@ -149,22 +149,26 @@ mdf-toolbox==0.7.1
# via mdf-forge
mdurl==0.1.2
# via markdown-it-py
monty==2026.2.18
monty==2026.7.16
# via
# matminer
# matminer (pyproject.toml)
# pymatgen-core
mpmath==1.3.0
# via sympy
mypy-extensions==1.1.0
# via black
narwhals==2.19.0
# via plotly
# via
# black
# isort
narwhals==2.26.0
# via
# plotly
# scikit-learn
networkx==3.6.1
# via pymatgen-core
numba==0.65.0
numba==0.67.0
# via sparse
numpy==2.4.4
numpy==2.4.6
# via
# aflow
# ase
Expand All @@ -182,9 +186,9 @@ numpy==2.4.4
# scipy
# sparse
# spglib
orjson==3.11.8
orjson==3.12.0
# via pymatgen-core
packaging==26.1
packaging==26.3
# via
# black
# matplotlib
Expand All @@ -198,15 +202,15 @@ pandas==2.3.3
# matminer
# matminer (pyproject.toml)
# pymatgen-core
pathspec==1.0.4
pathspec==1.1.1
# via black
pillow==12.2.0
pillow==12.3.0
# via matplotlib
platformdirs==4.9.6
platformdirs==4.11.11
# via
# black
# pylint
plotly==6.7.0
plotly==7.1.0
# via pymatgen-core
pluggy==1.6.0
# via
Expand All @@ -218,35 +222,35 @@ pycparser==3.0
# via cffi
pyflakes==3.4.0
# via flake8
pygments==2.20.0
pygments==2.21.0
# via
# pytest
# rich
# sphinx
pyjwt[crypto]==2.12.1
pyjwt[crypto]==2.14.0
# via globus-sdk
pylint==4.0.5
pylint==4.0.8
# via
# matminer
# matminer (pyproject.toml)
pymatgen==2026.3.23
pymatgen==2026.5.4
# via
# matminer
# matminer (pyproject.toml)
pymatgen-core==2026.4.16
pymatgen-core==2026.8.30
# via pymatgen
pymongo==4.16.0
pymongo==4.18.1
# via
# matminer
# matminer (pyproject.toml)
pyparsing==3.3.2
pyparsing==3.3.3
# via
# bibtexparser
# httplib2
# matplotlib
pypif==2.1.2
# via citrination-client
pytest==9.0.3
pytest==9.1.1
# via
# matminer
# matminer (pyproject.toml)
Expand All @@ -271,15 +275,15 @@ python-dateutil==2.9.0.post0
# pandas
pytokens==0.4.1
# via black
pytz==2026.1.post1
pytz==2026.3.post1
# via pandas
pyyaml==6.0.3
# via citrination-client
referencing==0.37.0
# via
# jsonschema
# jsonschema-specifications
requests==2.33.1
requests==2.34.2
# via
# citrination-client
# coveralls
Expand All @@ -294,13 +298,13 @@ rich==15.0.0
# via typer
roman-numerals==4.1.0
# via sphinx
rpds-py==0.30.0
rpds-py==2026.6.3
# via
# jsonschema
# referencing
ruamel-yaml==0.19.1
# via monty
scikit-learn==1.8.0
scikit-learn==1.9.1
# via
# dscribe
# matminer
Expand All @@ -321,11 +325,11 @@ six==1.17.0
# citrination-client
# pypif
# python-dateutil
snowballstemmer==3.0.1
snowballstemmer==3.1.1
# via sphinx
soupsieve==2.8.3
soupsieve==2.9.2
# via beautifulsoup4
sparse==0.18.0
sparse==0.19.2
# via dscribe
spglib==2.7.0
# via pymatgen-core
Expand Down Expand Up @@ -354,30 +358,31 @@ tabulate==0.10.0
# via pymatgen-core
termcolor==3.3.0
# via aflow
threadpoolctl==3.6.0
threadpoolctl==3.7.0
# via scikit-learn
tomlkit==0.14.0
tomlkit==0.15.1
# via pylint
tqdm==4.67.3
tqdm==4.70.1
# via
# matminer
# matminer (pyproject.toml)
# mdf-forge
# pymatgen-core
typer==0.24.1
typer==0.27.2
# via coveralls
typing-extensions==4.15.0
typing-extensions==4.16.0
# via
# ase
# beautifulsoup4
# referencing
# spglib
tzdata==2026.1
tzdata==2026.4
# via pandas
ujson==5.12.0
ujson==6.0.0
# via
# matminer
# matminer (pyproject.toml)
uncertainties==3.2.3
# via pymatgen-core
urllib3==2.6.3
urllib3==2.8.0
# via requests
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