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@fmfi-compbio

Computational Biology Research Group at Comenius University in Bratislava

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  1. deepnano-blitz deepnano-blitz Public

    Very fast ONT basecaller

    Rust 52 11

  2. admm-pruning admm-pruning Public

    Python 30 2

  3. osprey osprey Public

    Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.

    C++ 15 1

  4. warpstr warpstr Public

    Determining tandem repeat lengths using raw nanopore signals.

    Python 15 1

  5. coral-basecaller coral-basecaller Public

    Python 12 1

  6. heron heron Public

    HAC nanopore basecaller

    Python 6 2

Repositories

Showing 10 of 46 repositories
  • assembly-scripts Public

    A selection of scripts useful for genome assembly.

    fmfi-compbio/assembly-scripts's past year of commit activity
    Perl 0 MIT 0 0 0 Updated Sep 8, 2026
  • canCor-genome Public
    fmfi-compbio/canCor-genome's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 19, 2026
  • 2paths Public
    fmfi-compbio/2paths's past year of commit activity
    C++ 0 0 0 0 Updated Jun 30, 2026
  • jamang-code Public

    Code used for Jaminaea angkorensis analysis

    fmfi-compbio/jamang-code's past year of commit activity
    Python 0 MIT 0 0 0 Updated May 21, 2026
  • viz Public
    fmfi-compbio/viz's past year of commit activity
    Jupyter Notebook 0 CC-BY-4.0 1 0 0 Updated May 19, 2026
  • mad Public

    Webpage of Data Management course

    fmfi-compbio/mad's past year of commit activity
    HTML 1 0 0 0 Updated May 8, 2026
  • snp-activity Public
    fmfi-compbio/snp-activity's past year of commit activity
    HTML 0 0 0 0 Updated Apr 22, 2026
  • mbi Public
    fmfi-compbio/mbi's past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Dec 26, 2025
  • fmfi-compbio/pridav_tutorials's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 4, 2025
  • kdiff Public
    fmfi-compbio/kdiff's past year of commit activity
    C++ 2 0 0 0 Updated Sep 4, 2025

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