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[Feature] Ensure all BrainGlobe tools are compatible with the new format #780
Description
Once #769 is merged we need to ensure compatibility with other BrainGlobe tools:
-
brainglobe-ccf-translator -
brainglobe-data-api-volume -
brainglobe-heatmap -
brainglobe-napari-io -
brainglobe-registration -
brainglobe-segmentation -
brainglobe-space -
brainglobe-stitch -
brainglobe-template-builder -
brainglobe-utils -
brainglobe-workflows -
brainreg -
brainrender -
brainrender-napari -
cellfinder -
morphapi
Activity
adamltyson commentedon Mar 27, 2026
brainglobe-space doesn't have a dependency on the atlas API (direct or indirect) AFAIK
PolarBean commentedon Mar 27, 2026
brainglobe-data-api-volume is not yet functional with or without atlas api aha so lets just tick it now
adamltyson commentedon Mar 27, 2026
In principle cellfinder should be ok too. It indirectly depends on atlas API (via utils), but AFAIK doesn't call the API at all. Probably worth a quick test to make sure though.
IgorTatarnikov commentedon Jul 17, 2026
brainrenderaddressed in brainglobe/brainrender#461brainglobe-heatmapaddressed in brainglobe/brainglobe-heatmap#147brainregaddressed in brainglobe/brainreg#282brainrender-napariaddressed in brainglobe/brainrender-napari#259IgorTatarnikov commentedon Jul 28, 2026
This can be closed now, as far as I can tell, all tools are now compatible with V3. Most are backwards compatible, except for
brainrender-napariwhich is a bit more tightly integrated with the deeper levels ofbrainglobe-atlasapiand needed a few breaking changes for compatibility.