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  1. MAGpy MAGpy Public

    Forked from mw55309/MAGpy

    Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

    Python 62 23

  2. PULpy PULpy Public

    Open prediction of Polysaccharide Utilisation Loci (PUL)

    Python 27 10

  3. KOunt KOunt Public

    Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.

    Python 26

  4. snakemake_pipelines snakemake_pipelines Public

    A repository for public Snakemake pipelines

    Python 8

  5. sm_assemblies sm_assemblies Public

    Analysis of protein coding exons in single molecule assemblies

    Perl 7 1

  6. MAGwash MAGwash Public

    Pipeline to clean MAGs

    Python 5 1

Repositories

Showing 10 of 11 repositories
  • KOunt Public

    Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.

    WatsonLab/KOunt's past year of commit activity
    Python 26 GPL-3.0 0 1 0 Updated Feb 14, 2026
  • MAGpy Public Forked from mw55309/MAGpy

    Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

    WatsonLab/MAGpy's past year of commit activity
    Python 62 29 11 3 Updated Apr 1, 2023
  • single_and_multiple_binning Public

    A snakemake workflow for single- and multi- coverage binning

    WatsonLab/single_and_multiple_binning's past year of commit activity
    Python 1 MIT 1 0 0 Updated May 9, 2022
  • humann Public Forked from biobakery/humann

    HUMAnN 3.0 is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).

    WatsonLab/humann's past year of commit activity
    Python 0 74 0 0 Updated Mar 10, 2021
  • MAGwash Public

    Pipeline to clean MAGs

    WatsonLab/MAGwash's past year of commit activity
    Python 5 1 1 0 Updated May 20, 2020
  • PULpy Public

    Open prediction of Polysaccharide Utilisation Loci (PUL)

    WatsonLab/PULpy's past year of commit activity
    Python 27 10 6 0 Updated Apr 22, 2020
  • sm_assemblies Public

    Analysis of protein coding exons in single molecule assemblies

    WatsonLab/sm_assemblies's past year of commit activity
    Perl 7 1 1 0 Updated Mar 3, 2020
  • GoogleMAGs Public

    Workflow for MAG construction

    WatsonLab/GoogleMAGs's past year of commit activity
    Python 1 MIT 2 0 0 Updated Jan 28, 2020
  • chicken_pig_amr Public

    Snakemake pipeline for assembly of chicken and pig AMR datasets

    WatsonLab/chicken_pig_amr's past year of commit activity
    Python 0 1 0 0 Updated Oct 5, 2018
  • snakemake_pipelines Public

    A repository for public Snakemake pipelines

    WatsonLab/snakemake_pipelines's past year of commit activity
    Python 8 GPL-3.0 0 0 0 Updated Oct 16, 2017
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