Merge dev-kia into master, for version 0.8 - #1

Merged

kia-kn merged 335 commits into

Jun 27, 2026

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Commits on Oct 16, 2025

Tweaked plot_distance_weight_map to add smallest_distance and largest_distance from valid source
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Commits on Oct 18, 2025

Update job_process_heatmap_unified to accomodate XOR and other dataset types
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Commits on Oct 22, 2025

Commits on Oct 29, 2025

Added TBD2 variants - 3 SD versions
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Commits on Nov 1, 2025

Creating summary tables per dataset subgroup (ex. mainEff, her=0.2, EDM-1)
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Commits on Nov 7, 2025

Created run/job scripts for wilcoxon rank-sum test (and permutation test)
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Commits on Nov 8, 2025

Changed multiple comparisons correction method to Benjamini-Hochberg
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Commits on Nov 12, 2025

Created Normalized_Feature_Importance column within rankings_list.csv's and using it for wilcoxon test
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Commits on Nov 14, 2025

Changing from ranksums to mannwhitneyu in scipy
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Commits on Dec 10, 2025

Replaced TBD1 and TBD2 with MultiSWRF and MultiSWRFDB everywhere except pytests.txt; added MuRelief10 and MuRelief100 to job_rebate_analysis.py
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Commits on Dec 12, 2025

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Commits on Dec 29, 2025

Fixed job names so that sanity check datasets with the same filenames but different paths don't overwrite each other
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Commits on Dec 30, 2025

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Commits on Jan 6, 2026

Increased CPU cores to 8 per job for parallelization of RBA score computation; for 10,000 feature dataset
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Commits on Jan 9, 2026

Commits on Jan 12, 2026

Changing heatmap to MultiSWRFDB variants version
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Commits on Jan 13, 2026

Commits on Jan 15, 2026

Print statements to see why multiswrf/swrf are taking so much longer than multiswrfdb
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Commits on Jan 16, 2026

Commits on Jan 17, 2026

Removing logging to track pure runtime for SURF/MultiSURF and star equivalents; setting up code for the run on 100k feature dataset for old algorithms
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Commits on Jan 22, 2026

Changed heatmap for 2018-algorithms-only version
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Commits on Jan 23, 2026

Commits on Jan 26, 2026

Prepping runtime benchmark run for MultiSURF, 16 cores 10k feature dataset
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Commits on Jan 27, 2026

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Commits on Feb 6, 2026

Created cleaner names for RBAs in mean/median rank tables
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Commits on Feb 9, 2026

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Commits on Feb 13, 2026

Adding comment to clarify that U_perm is now the actual U score
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Commits on Feb 27, 2026

Increased number of cores per job to 16 to prepare for runs on 10k and 100k feature datasets
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Commits on Mar 10, 2026

Commits on Mar 11, 2026

Commits on Mar 13, 2026

Tweaking job_global_rba_rankings.py to include larger feature datasets as part of its calculation
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Commits on Mar 16, 2026

Excluding xor-4 and xor-5 from global rba rankings
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Commits on Mar 17, 2026

Commits on Mar 19, 2026

Commits on Apr 2, 2026

Commits on Apr 17, 2026

Updated readme.md to include new algorithms in text summary
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Commits on Apr 22, 2026

Ran mkdocs gh-deploy to update documentation site
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Commits on Apr 23, 2026

Commits on Apr 25, 2026

Commits on Jun 18, 2026

Replacing analysis scripts with up-to-date versions: new heatmaps with purple/white and new global metrics
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Commits on Jun 26, 2026

Commits on Jun 27, 2026