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TalusBio / timsbuktoolkit Public

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feat(calib_dash): interactive dashboard for RT calibration fitting - #82

#82

Open

jspaezp wants to merge 60 commits into

mainTalusBio/timsbuktoolkit:mainfrom

feat/calib-dashboardTalusBio/timsbuktoolkit:feat/calib-dashboardCopy head branch name to clipboard

Conversation Commits60 (60)Checks Files changed

Open

feat(calib_dash): interactive dashboard for RT calibration fitting#82
jspaezp wants to merge 60 commits into
mainfrom
feat/calib-dashboard

Commits

Commits on Jul 28, 2026

feat(calibrt): add a FitObserver callback to the calibration fit
jspaezp
committed
fix(calibrt): report DP span separately from greedy path tails
jspaezp
committed
perf(calibrt): reuse fit buffers and stop reallocating in reconfigure
jspaezp
committed
test(calibrt): assert pointer identity, not just capacity, for reused fit buffers
jspaezp
committed
feat(calib_dash): add crate scaffold and the byte-budgeted frame slab
jspaezp
committed
fix(calib_dash): gate stride writes on an explicit retained count, not Vec::capacity()
jspaezp
committed
feat(calib_dash): record fit events into a reusable FitRecording
jspaezp
committed
fix(calib_dash): drop capacity debug_asserts, cover suppression-clear regression
jspaezp
committed
feat(calib_dash): add convergence metrics and churn diffing
jspaezp
committed
fix(calib_dash): correct DP-chaining proof, cover disjoint curve_delta domains
jspaezp
committed
feat(calib_dash): add app state, vim count prefix and the step machine
jspaezp
committed
fix(calib_dash): saturate the count prefix and cap stage-stepping work
jspaezp
committed
feat(calib_dash): add the fit, convergence and tolerances tabs
jspaezp
committed
fix(calib_dash): restore heatmap vertical resolution, add overlay toggles and DP pane coverage
jspaezp
committed
feat(calib_dash): add the batch hook, terminal entry and standalone replay
jspaezp
committed
fix(calib_dash): validate untrusted snapshot fields, keep the delta baseline across a failed fit
jspaezp
committed
feat(cli): open the calibration dashboard under TIMSSEEK_CALIB_DASHBOARD
jspaezp
committed
feat(calib_dash): wire the key map, batch scrubber, post-Phase-2 pause, and Tolerances rendering
jspaezp
committed
fix(timsseek_cli): open the dashboard's post-Phase-2 pause and record ridge width
jspaezp
committed
ci: test calibrt/calib_dash and check the calib-dashboard feature
jspaezp
committed
fix(calib_dash): guard present() on the stepper and keep the status line within width
jspaezp
committed
fix(calib_dash): make `d` actually populate the DP pane on a live batch
jspaezp
committed
feat(calib_dash): add a dismissible key-map overlay toggle to App
jspaezp
committed
fix(calib_dash): fix the Fit heatmap's y-axis inversion and complete the design-review pass
jspaezp
committed
test(calib_dash): regenerate Fit/Convergence/Tolerances snapshots for the design pass
jspaezp
committed
feat(calib_dash): cycle Fit-tab mark layers and mark cells by inversion
jspaezp
committed
feat(calib_dash): give the Fit tab's active mark layer its own subtitle
jspaezp
committed
docs(calibrt): correct the observation-cost and reconfigure claims
jspaezp
committed
refactor(timsseek_cli): give the calib-dashboard hooks constant arity
jspaezp
committed
refactor(calib_dash): delete the vestigial Stage machinery and unreachable helpers
jspaezp
committed
refactor: drop the unused batch range from the dashboard hook
jspaezp
committed
refactor(calib_dash): fold duplicated fit and y-flip logic into one place
jspaezp
committed
test(calib_dash): record REVERSED cells in the UI snapshots
jspaezp
committed
chore(calib_dash): name the frame budgets and share the ratatui pin
jspaezp
committed
docs(calib_dash): drop the process archaeology from the comments
jspaezp
committed
perf(calibrt): drop the dead FitEvent payload fields
jspaezp
committed
docs(development): split the calibration dashboard env vars out of the table
jspaezp
committed
refactor(calibrt): make the pathfinding scratch own every reused buffer
jspaezp
committed
refactor(calibrt): share the span validation between Grid::new and reconfigure
jspaezp
committed
test(calibrt): drop the assertions that cannot fail
jspaezp
committed
docs(calibrt): cut the speculation and the repeated caveats
jspaezp
committed
refactor(calib_dash): spell each key binding once
jspaezp
committed
refactor(calib_dash): one bin_index, and drop guards the callers make impossible
jspaezp
committed
test(calib_dash): stop pinning the same frame twice
jspaezp
committed
fix(calib_dash): size the keys overlay from its own rows
jspaezp
committed
feat(calib_dash): report magnitudes the tabs were silently dropping
jspaezp
committed
refactor(calibrt): stop paying for scaffolding the fit does not use
jspaezp
committed
refactor(calibrt): own the ridge fraction instead of letting callers spell it
jspaezp
committed
refactor(calib_dash): cut the scaffolding, the ceremony and the prose
jspaezp
committed
refactor(timsseek_cli): write the dashboard hook once per arm, not twice
jspaezp
committed
test(calibrt): keep the tests that can fail, and cover dp_range's suffix
jspaezp
committed
fix(calib_dash): refit the DP pane when it reopens on the same batch
jspaezp
committed
refactor(calib_dash): drop two lines nothing can reach
jspaezp
committed
refactor(calibrt): delete the terminal plots the dashboard replaces
jspaezp
committed
fix(calib_dash): weigh calibrants the way Step A does, not by score
jspaezp
committed
refactor(calib_dash): drop the calibrant score and name the fallback tolerance
jspaezp
committed
refactor(calibrt): own the ridge summary, the curve and the range fold
jspaezp
committed
fix(timsquery_viewer): fit the calibration grid to the calibrants
jspaezp
committed
stuff
jspaezp
committed
refactor(calibrt): own the shared fit sequence
jspaezp
committed

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