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Update documentation and clean #2

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49eaef3
update documentation
melisandeteng Apr 12, 2024
8685f48
update README
melisandeteng Apr 12, 2024
f2d535c
cleanup names of folders
melisandeteng Apr 12, 2024
495cdf5
add process to extract worldclim raster
melisandeteng Apr 12, 2024
1baf36d
update readme
melisandeteng Apr 12, 2024
50bb049
fix typo
melisandeteng Apr 15, 2024
70dca70
clean notebook
melisandeteng Apr 15, 2024
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9 changes: 6 additions & 3 deletions data_processing/satellite/download_rasters_from_planetary_computer.py
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Original file line number Diff line number Diff line change
Expand Up @@ -12,8 +12,8 @@
import planetary_computer
import argparse

#Get your API key from Planetary computer, and replace "api-key" accordingly
planetary_computer.settings.set_subscription_key("api-key")
# This should be a secret!! ask me for mine

# Incase Planetary computer sleeps off,
# Define the number of retries and the wait interval between retries
Expand All @@ -27,10 +27,11 @@
# modifier=planetary_computer.sign_inplace, --> this is depricated ??
)

# Define the bands we are interested in --> r,g,b,nir and true color image or "visual"
# Define the bands we are interested in --> ["B02", "B03", "B04", "B08"] for r,g,b,nir or "visual" for true color image
BANDS = ["B02", "B03", "B04", "B08"]

time_of_interest = "2022-06-01/2022-07-31" #this is for summer, if winter use "2022-12-01/2023-01-31"
# "2022-06-01/2022-07-31" for SatBird-USA-summer, "2022-12-01/2023-01-31" for SatBird-USA-winter, "2022-01-01/2023-01-01" for SatBird-Kenya
time_of_interest = "2022-06-01/2022-07-31"


def convert_polygon(polygon_str):
Expand Down Expand Up @@ -179,11 +180,13 @@ def process_row_mosaic(row, save_dir, cc=20, no_item_found_txt="no_item_found.t


def main():
#This was used for SatBird-USA
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# Specify the directory to save the rasters
WINTER_SAVE_DIRECTORY = "/network/projects/ecosystem-embeddings/ebird_new/rasters_new/winter_rasters/"
SUMMER_SAVE_DIRECTORY = "/network/projects/_groups/ecosystem-embeddings/ebird_new/rasters_new/summer_rasters"

#pologons are obtained with the bounding_box_from_center function in data_processing/satellite/utils.py
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winter_polygons = "/network/projects/ecosystem-embeddings/ebird_new/polygons_winter.csv"
summer_polygons = "/network/projects/ecosystem-embeddings/ebird_new/polygons_summer.csv"

Expand Down