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TODO scaffolding for cardiac echo parsing and known quirks (#93) - #110

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VarenyaJ merged 2 commits into
vj/viewpoint-notebook-demofrom
vj/viewpoint-scaffolding
Jul 20, 2026
Merged

VarenyaJ merged 2 commits into
vj/viewpoint-notebook-demofrom
vj/viewpoint-scaffolding

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Summary

  • New skeleton etl/sections/fetal_echo.py
  • New cardiac.* section in concept_aliases.yaml documenting the Observer fetal_echo_anatomy[] <-> ViewPoint HeartFetus.* correspondence - documentation only, the parser itself stays a skeleton.
  • TODO comments only (zero behavior change) on: _resolve_subject_ga in both observer_phenopacket.py and viewpoint_phenopacket.py (a dating.get("ga_weeks") dead-key quirk - that key is never actually returned by either pregnancy-dating parser), clinical_impression.py's _infer_growth_assessment (computed but never consumed by either builder), and a note on all builder files about now having 3x-duplicated private helpers worth revisiting.
  • Full details will probably need an issue e.g. "Cardiac and Full Anatomy Parity"

@VarenyaJ VarenyaJ added this to the prenatalseq refinements milestone Jul 17, 2026
@VarenyaJ VarenyaJ self-assigned this Jul 17, 2026
@VarenyaJ VarenyaJ added documentation Improvements or additions to documentation enhancement New feature or request labels Jul 17, 2026
@VarenyaJ
VarenyaJ marked this pull request as ready for review July 20, 2026 13:19
@VarenyaJ
VarenyaJ merged commit 344adad into vj/viewpoint-notebook-demo Jul 20, 2026
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