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NicoDeVeaux
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atacseq-nfcore
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Fix/featurecounts mixed se pe
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NicoDeVeaux
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Fix/featurecounts mixed se pe
#3
NicoDeVeaux
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NicoDeVeaux/atacseq-nfcore:nf-core-modules-update
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Commits on Jul 24, 2026
Template update for nf-core/tools version 4.0.3
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Commits on Jul 29, 2026
Merge nf-core/tools 4.0.3 template update into dev
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Commits on Aug 3, 2026
Revert the subread 2.0.1 pin
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fix(consensus): count mixed SE/PE libraries per-batch instead of pinning subread
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test: cover mixed SE/PE consensus counting
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docs: document the per-library-type consensus count matrices
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Commits on Aug 20, 2026
Add CHANGELOG entry for template 4.0.3
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Merge pull request #453 from NicoDeVeaux/merging-template-4.0.3
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Commits on Aug 21, 2026
Sort peak QC plot inputs deterministically
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Add CHANGELOG entry for #454
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Sort the plot inputs inside the modules instead of the channel
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Commits on Aug 22, 2026
Merge pull request #454 from NicoDeVeaux/fix/deterministic-peak-qc-plot-order
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Merge branch 'dev' into fix/featurecounts-mixed-se-pe
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Use explicit closure parameters in the consensus count sorting
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Commits on Aug 23, 2026
Count read pairs, not reads, in paired-end featureCounts
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Count read pairs, not reads, in paired-end featureCounts
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