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Sync GSVA 0.3.0 mixed-delimiter support - #2

Merged
maggiecam merged 2 commits into
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harbor/gsva-0.3.0-mixed-delimiters
Oct 4, 2026
Merged

maggiecam merged 2 commits into
masterfrom
harbor/gsva-0.3.0-mixed-delimiters

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Summary

  • export the merged canonical OMIX GSVA 0.3.0 scientific source byte-for-byte
  • detect expression, metadata, and pathway delimiters independently
  • expose auto detection plus shared and per-input overrides in the App Panel
  • update canonical provenance, pathway asset provenance, README, and adapter summary
  • validate the real workflow format contract: CSV expression/metadata plus TSV pathways

Validation

  • python3 tests/test-source-parity.py --canonical-root /Users/maggiec/GitHub/Maggie/NIDAP/OMIX
  • python3 tests/test-app-panel.py --canonical-schema /Users/maggiec/GitHub/Maggie/NIDAP/OMIX/modules/OMIX-GSVA/schemas/interface.yml
  • Rscript tests/test-adapter-inputs.R
  • Rscript tests/test-representative-run.R
  • git diff --check

Remaining platform evidence

After merge and Code Ocean sync, run capsule 3631910 using the attached DEG CSV/metadata CSV and versioned MSigDB TSV asset. Do not release until that run succeeds.

@maggiecam
maggiecam merged commit 1508651 into master Oct 4, 2026
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@maggiecam
maggiecam deleted the harbor/gsva-0.3.0-mixed-delimiters branch October 4, 2026 04:49
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