This repository provides scripts for homology and domain-based searches in transcriptomes or proteomes
- BLAST is the most commonly used tool and allows you to find similar sequences by aligning your query against local or online databases
- Local BLAST is highly recommended for fast searches on large datasets, high-throughput analysis and custom database searches
Pfam provides HMM profiles for protein domains. Using HMMER tools, you can detect conserved domains in your protein sequences