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Welcome to Ninetails' Wiki!

Here you will find a user's guide and tips to make working with Ninetails fun and easy.

In addition to the standard pipeline, there is also an overview of the additional features the package is equipped with.

Pipeline	Basecaller	Input format	Function	Status
Dorado DRS	Dorado ≥ 1.0.0	POD5 + summary	`check_tails_dorado_DRS()`	Recommended
Dorado cDNA	Dorado ≥ 1.0.0	POD5 + BAM + summary	`check_tails_dorado_cDNA()`	Under development
Guppy (legacy)	Guppy ≤ 6.0.0	fast5 + Nanopolish	`check_tails_guppy()`	Maintenance only

Enjoy using Ninetails!

Ninetails has been developed in the Laboratory of RNA Biology (Dziembowski Lab) at the International Institute of Molecular and Cell Biology in Warsaw.