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Reporting faithfulness: audit items B1-B11 (plan B) - #75

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druvus wants to merge 14 commits into

fix-audit-data-safetyfrom

fix-audit-report-faithfulness

Commits on Oct 1, 2026
- Name each caller correctly in the run provenance
  
  druvus
  and
  claude
  committed
  f808a8b
- Do not report breakpoint-straddling windows as missing references
  
  druvus
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  claude
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  7984ac5
- Report the union of overlapping regions in the verdict
  
  druvus
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  claude
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  c078089
- Keep the method comparison in step with donor re-attribution
  
  druvus
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  claude
  committed
  86e1bdb
- Reject a --lineage-map that does not exist
  
  druvus
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  claude
  committed
  f05682d
- Report a barcode caller that could not run as not run
  
  druvus
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  committed
  505270f
- Judge PHI at the run's alpha and report an untestable test as such
  
  druvus
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  claude
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  14a9b21
- Label donor-absent regions and the pair plot for what they show
  
  druvus
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  claude
  committed
  da2582d
- Bring report, help and documentation text up to date
  
  druvus
  and
  claude
  committed
  da6d8bf
- Drop the unused seaborn dependency and stop recording a failed version probe
  
  druvus
  and
  claude
  committed
  c2d830c
- Validate the remaining CLI inputs before any work starts
  
  druvus
  and
  claude
  committed
  b0d0921
- Record the reporting fixes in the changelog
  
  druvus
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  claude
  committed
  aceb7dd
- Address the plan B review: explain breakpoint gaps per window, give the real not-run reason
  
  druvus
  and
  claude
  committed
  0c9daf2
- Record the plan B review outcome in the audit spec
  
  druvus
  and
  claude
  committed
  1fab671

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Reporting faithfulness: audit items B1-B11 (plan B) - #75

Reporting faithfulness: audit items B1-B11 (plan B)#75
druvus wants to merge 14 commits into
fix-audit-data-safetyfrom
fix-audit-report-faithfulness

Commits on Oct 1, 2026

Name each caller correctly in the run provenance

Do not report breakpoint-straddling windows as missing references

Report the union of overlapping regions in the verdict

Keep the method comparison in step with donor re-attribution

Reject a --lineage-map that does not exist

Report a barcode caller that could not run as not run

Judge PHI at the run's alpha and report an untestable test as such

Label donor-absent regions and the pair plot for what they show

Bring report, help and documentation text up to date

Drop the unused seaborn dependency and stop recording a failed version probe

Validate the remaining CLI inputs before any work starts

Record the reporting fixes in the changelog

Address the plan B review: explain breakpoint gaps per window, give the real not-run reason

Record the plan B review outcome in the audit spec