Enable EAMxx CMORization, E3SM Diags and add ts-level vertical regrid #827
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| # Example: EAMxx → CMIP and e3sm_diags, initially contributed by Shixuan Zhang. | ||
| # Reproduces the cfg from issue #820 plus e3sm_diags-related tasks. | ||
| # (https://github.com/E3SM-Project/zppy/issues/820) | ||
| # | ||
| # Demonstrates: | ||
| # - EAMxx CMORization end-to-end (issue #817) | ||
| # - The fix to the fragile component-detection gate (now uses prc_typ), | ||
| # so input_component="eamxx" with input_files="AVERAGE.nmonths_x1" works | ||
| # - EAMxx-specific ncremap flags (--ps_nm=${file}/ps, --vrt_in=vert_L128.nc) | ||
| # auto-emitted when prc_typ == 'eamxx' | ||
| # - climo, ts, e3sm_to_cmip, and e3sm_diags wiring for an EAMxx run | ||
| # | ||
| # Run with: zppy -c examples/post.v3.eamxx.cfg | ||
| [default] | ||
| input = /pscratch/sd/z/zhan391/e3smv4_project/ne256pg2_ne256pg2.F20TR-SCREAMv1.July-1.spanc800.2xauto.acc150.n0032.test2.1 | ||
| output = /pscratch/sd/c/chengzhu/tests/ne256pg2_ne256pg2.F20TR-SCREAMv1.July-1.spanc800.2xauto.acc150.n0032.test2.1_05182026 | ||
| case = ne256pg2_ne256pg2.F20TR-SCREAMv1.July-1.spanc800.2xauto.acc150.n0032.test2.1 | ||
| www = /global/cfs/cdirs/e3sm/www/chengzhu/tests/zppy_for_eamxx_05182026 | ||
| partition = "debug" | ||
| account = "e3sm" | ||
| campaign = "water_cycle" | ||
| debug = False | ||
| #environment_commands = "source /global/common/software/e3sm/anaconda_envs/test_e3sm_unified_1.13.0rc10_pm-cpu.sh" | ||
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| [climo] | ||
| active = True | ||
| walltime = "2:00:00" | ||
| years = "1995:2004:10", | ||
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| [[ atm_monthly_180x360_aave ]] | ||
| # The following e3sm_diags sets require it: | ||
| # "lat_lon", "zonal_mean_xy", "zonal_mean_2d", "polar", "cosp_histogram", | ||
| # "meridional_mean_2d", "annual_cycle_zonal_mean", "zonal_mean_2d_stratosphere", | ||
| # "aerosol_aeronet", "aerosol_budget" | ||
| input_component = "eamxx" | ||
| case = "1ma_ne30pg2" | ||
| input_files = "AVERAGE.nmonths_x1" | ||
| frequency = "monthly" | ||
| input_subdir = "run/" | ||
| mapping_file = map_ne30pg2_to_cmip6_180x360_aave.20200201.nc | ||
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| [[ atm_monthly_diurnal_8xdaily_180x360_aave ]] | ||
| # The following e3sm_diags sets require it: | ||
| # "diurnal_cycle" | ||
| input_component = "eamxx" | ||
| case = "3ha_ne30pg2" | ||
| input_files = "AVERAGE.nhours_x3" | ||
| input_subdir = "run/" | ||
| frequency = "diurnal_8xdaily" | ||
| mapping_file = map_ne30pg2_to_cmip6_180x360_aave.20200201.nc | ||
| vars = "precip_liq_surf_mass_flux,precip_ice_surf_mass_flux" | ||
| # Bump walltime for a potential performance issue in ncclimo for processing eamxx high freq data. | ||
| walltime = "4:00:00" | ||
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| [[ land_monthly_climo ]] | ||
| active = True | ||
| # This subtask is a dependency for the e3sm_diags task's lnd_monthly_mvm_lnd subtask. | ||
| # The following e3sm_diags sets require it: | ||
| # "lat_lon_land" | ||
| input_component = "elm" | ||
| frequency = "monthly" | ||
| input_files = "elm.h0" | ||
| input_subdir = "run/" | ||
| vars = "" # Setting this as "" will tell zppy to use ALL variables | ||
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| [[ land_monthly_180x360_traave ]] | ||
| active = True | ||
| input_component = "elm" | ||
| frequency = "monthly" | ||
| input_files = "elm.h0" | ||
| input_subdir = "run/" | ||
| mapping_file = "map_ne256pg2_to_cmip6_180x360_traave.20250301.nc" | ||
| vars = "" | ||
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| [ts] | ||
| active = True | ||
| walltime = "00:30:00" | ||
| years = "1995:2004:5" | ||
| ts_num_years=5 | ||
| #qos = "debug" | ||
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| [[atm_monthly_180x360_aave]] | ||
| # Merged 2D+3D atm timeseries: vert_remap_vars selectively vert-remaps the | ||
| # 3D vars into a sibling ts_vert_remap/ directory, so downstream e3sm_to_cmip | ||
| # sees a single clean ts subsection. | ||
| input_component = "eamxx" | ||
| input_subdir = "run/" | ||
| case = "1ma_ne30pg2" | ||
| input_files = "AVERAGE.nmonths_x1" | ||
| frequency = "monthly" | ||
| mapping_file = map_ne30pg2_to_cmip6_180x360_aave.20200201.nc | ||
| vars="ps,surf_radiative_T,SeaLevelPressure,IceWaterPath,qv_2m,precip_liq_surf_mass_flux,precip_ice_surf_mass_flux,omega_at_500hPa,omega_at_700hPa,omega_at_850hPa,T_mid_at_700hPa,T_2m,surface_upward_latent_heat_flux,surf_sens_flux,z_mid_at_700hPa,wind_speed_10m,surf_evap,U_at_10m_above_surface,V_at_10m_above_surface,LW_clrsky_flux_dn_at_model_bot,LW_clrsky_flux_up_at_model_top,LW_flux_dn_at_model_bot,LW_flux_up_at_model_bot,LW_flux_up_at_model_top,SW_clrsky_flux_dn_at_model_bot,SW_clrsky_flux_dn_at_model_top,SW_clrsky_flux_up_at_model_bot,SW_clrsky_flux_up_at_model_top,SW_flux_dn_at_model_bot,SW_flux_dn_at_model_top,SW_flux_up_at_model_bot,SW_flux_up_at_model_top,ShortwaveCloudForcing,LongwaveCloudForcing,isccp_cldtot,U,V,T_mid,z_mid,omega,RelativeHumidity,p_mid,qv" | ||
| # NOTE: ncclimo --prc_typ=eamxx does NOT auto-extract ps/hyai/hyam/hybi/hybm | ||
| # for 3D vars the way --prc_typ=cam/eam does due to a meta data issue, so we must list them explicitly | ||
| # in extra_vars. ps is load-bearing for the vert_remap step (ts.bash:138 | ||
| # passes --ps_nm=${file}/ps to ncremap). | ||
| # If ncclimo and eamxx is fixed upstream to mirror cam/eam behavior, drop | ||
| # ps + hybrid coeffs here. | ||
| extra_vars= "ps,hyai,hyam,hybi,hybm,area,landfrac,ocnfrac" | ||
| vert_remap_vars = "U,V,T_mid,z_mid,omega,RelativeHumidity,p_mid,qv" | ||
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| [[ atm_daily_180x360_aave ]] | ||
| active = True | ||
| # This subtask is a dependency for the e3sm_diags task's atm_monthly_180x360 subtask. | ||
| # The following e3sm_diags sets require it: | ||
| # "tropical_subseasonal", "precip_pdf" | ||
| input_component = "eamxx" | ||
| case = "1da_ne30pg2" | ||
| input_files = "AVERAGE.ndays_x1" | ||
| frequency = "daily" | ||
| input_subdir = "run/" | ||
| mapping_file = map_ne30pg2_to_cmip6_180x360_aave.20200201.nc | ||
| # Needed for Wheeler Kiladis | ||
| vars = "LW_flux_up_at_model_top,precip_liq_surf_mass_flux,precip_ice_surf_mass_flux,U_at_850hPa" | ||
| # For this simulation's "1da_ne30pg2.AVERAGE.ndays_x1" stream, each file | ||
| # holds one daily average (1 day, 1 timestep). Override the zppy defaults | ||
| # (dpf=30, tpd=1) which assume E3SM EAM monthly h0 files; otherwise ncclimo | ||
| # treats each daily file as 30 days and silently produces ts files whose | ||
| # contents (~2 months) don't match their filenames. | ||
| dpf = 1 | ||
| tpd = 1 | ||
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| [[ atm_monthly_glb ]] | ||
| active = True | ||
| # This subtask is a dependency for the global_time_series task. | ||
| input_component = "eam" | ||
| input_subdir = "run/" | ||
| case = "1ma_ne30pg2" | ||
| input_files = "AVERAGE.nmonths_x1" | ||
| frequency = "monthly" | ||
| mapping_file = "glb" | ||
| vars="ps,surf_radiative_T,SeaLevelPressure,IceWaterPath,qv_2m,precip_liq_surf_mass_flux,precip_ice_surf_mass_flux" | ||
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| [[ rof_monthly ]] | ||
| active = True | ||
| # The following e3sm_diags sets require it: | ||
| # "streamflow" | ||
| input_component = "mosart" | ||
| frequency = "monthly" | ||
| input_files = "mosart.h0" | ||
| input_subdir = "run/" | ||
| mapping_file = "" | ||
| vars = "RIVER_DISCHARGE_OVER_LAND_LIQ" | ||
| extra_vars = 'areatotal2' | ||
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| [e3sm_to_cmip] | ||
| active = True | ||
| frequency = "monthly" | ||
| ts_grid = "180x360_aave" | ||
| ts_num_years=5 | ||
| walltime = "00:10:00" | ||
| years = "1995:2004:5" | ||
| qos = "debug" | ||
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| [[atm_monthly_180x360_aave]] | ||
| # Merged subsection matching the [ts] atm_monthly_180x360_aave output. | ||
| # Without cmip_vars, e3sm_to_cmip uses its built-in default list (~41 vars). | ||
| # Uncomment to override the default ~41-var list. | ||
| #cmip_vars = "pr, cltisccp, evspsbl, hfls, hfss, huss, ps, psl, rlds, rldscs, rlus, rlut, rlutcs, rsds, rsdscs, rsdt, rsus, rsuscs, rtmt, uas, vas, sfcWind, tas, ts, ta, ua, va, zg" | ||
| input_component = "eamxx" | ||
| case = "1ma_ne30pg2" | ||
| input_files = "AVERAGE.nmonths_x1" | ||
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| [e3sm_diags] | ||
| active = True | ||
| multiprocessing = True | ||
| num_workers = 8 | ||
| ref_start_yr = 1995 | ||
| ref_final_yr = 2004 | ||
| ts_num_years = 5 | ||
| walltime = "2:00:00" | ||
| years = "1995:2004:10", | ||
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| # case inherits the top-level [default] case; climo output naming includes | ||
| # the stream id automatically via fml_nm, so this subsection can consume | ||
| # both monthly and diurnal climo without per-frequency overrides. | ||
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| [[ atm_monthly_180x360_aave ]] | ||
| # `e3sm_diags` is largely driven by which e3sm_diags sets are requested: | ||
| sets="lat_lon","zonal_mean_xy","zonal_mean_2d","polar","cosp_histogram","meridional_mean_2d","annual_cycle_zonal_mean","enso_diags","qbo","zonal_mean_2d_stratosphere","aerosol_aeronet","mp_partition","tropical_subseasonal","precip_pdf","streamflow","diurnal_cycle", | ||
| # sets = #"tc_analysis," # not yet supported for eamxx! | ||
| climo_diurnal_frequency = "diurnal_8xdaily" | ||
| climo_diurnal_subsection = "atm_monthly_diurnal_8xdaily_180x360_aave" | ||
| ts_daily_subsection = "atm_daily_180x360_aave" | ||
| # ts_subsection defaults to "atm_monthly_180x360_aave" — matches the merged | ||
| # [ts] subsection above, so no explicit override needed. | ||
| grid = '180x360_aave' | ||
| short_name = 'e3sm.amip.EAMXX.test2_1' |
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| Original file line number | Diff line number | Diff line change |
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@@ -46,6 +46,18 @@ def e3sm_to_cmip(config: ConfigObj, script_dir: str, existing_bundles, job_ids_f | |
| default_cmip_plevdata, | ||
| ParameterInferenceType.PATH_INFERENCE, | ||
| ) | ||
| # EAMxx needs an explicit source vertical grid file (L128); | ||
| # EAM/CAM have vertical coord info embedded in the file already. | ||
| if c["prc_typ"] == "eamxx": | ||
| default_vrt_in_file = ( | ||
| f"{c['diagnostics_base_path']}/e3sm_to_cmip_data/grids/vert_L128.nc" | ||
|
Collaborator
There was a problem hiding this comment. I see the code already had a reference to Claude says the following, emphasis my own:
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@forsyth2 Prefixing with diagnostics_base_path should already imply the data are pre-installed. I think the current approach is fine, but feel free to update if you think it improves clarity.
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Yes I suppose looking at it again, that makes sense. It was just a little confusing when I was trying to figure out which tasks had |
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| ) | ||
| set_value_of_parameter_if_undefined( | ||
| c, | ||
| "vrt_in_file", | ||
| default_vrt_in_file, | ||
| ParameterInferenceType.PATH_INFERENCE, | ||
| ) | ||
| year_sets: List[Tuple[int, int]] = get_years(c["years"]) | ||
| # Loop over year sets | ||
| for s in year_sets: | ||
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It's a little inconsistent to use
vrtfor 2 of the parameters andvertfor another. But I don't know if it's worth changing (and risking breaking something else) at this point.There was a problem hiding this comment.
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Good catch! Let me try to rename vert_remap_vars → vrt_remap_vars — aligns everything with NCO's vrt_ prefix to be consistent. Since these are newly added parameters, it would be good to fix before releasing to the users.
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@zhangshixuan1987 just a quick note on this: you may need to rename vert_remap_vars to vrt_remap_vars. This change was made to reduce variation in parameter names.