Add resource usage measurement injection to CWL interpreter - #5526

Merged

adamnovak merged 23 commits into

issues/5477-cpu-usage-docker-cwl

Jul 9, 2026

Commits on Jul 1, 2026

add injected container cpu/memory accounting for cwl and wdl

Avni Gandhi
authored and
adamnovak
committed
cd214b2
Change output hook and avoid hooking container types that don't need it
adamnovak
committed
62e252b
Fix type checking
adamnovak
committed
8da4efd
Re-document interpreter.py
adamnovak
committed
52d319e
Address interpreter.py review comments
adamnovak
committed
65d3078
Note dependency on default runner
adamnovak
committed
cac8297
Remove incomplete or unwanted tests
adamnovak
committed
4cf943a
Make interpreter.py able to be about more than just the code injection system
adamnovak
committed
ef5d547
Stop requiring a fixed Bash path and stop unpacking what could be real user argument lists
adamnovak
committed
79401f3
Add Anthropic Claude's idea of what waste_cpu_memory.cwl probably was supposed to be
adamnovak
committed
02dc3a6

Commits on Jul 2, 2026

Merge branch 'master' into issues/5477-cpu-usage-docker-cwl
adamnovak
authored
15d11fd

Commits on Jul 6, 2026

Merge remote-tracking branch 'upstream/master' into issues/5477-cpu-usage-docker-cwl
adamnovak
committed
a204780
POSIX-ify injected shell code
adamnovak
committed
3a9bccf
Stop assuming stat
adamnovak
committed
95868c0
Read cpu stats the same way for cgroups v1 as v2
adamnovak
committed
b36cda7
Mechanically translate awk to shell
adamnovak
committed
2eebbfc
Complain about how we need to add a mount somehow
adamnovak
committed
f17e682
Hide the usage data in the temp directory
adamnovak
committed
f5b868e
Merge remote-tracking branch 'upstream/issues/5477-cpu-usage-docker-cwl' into issues/5477-cpu-usage-docker-cwl
adamnovak
committed
df4af80

Commits on Jul 7, 2026

Commits on Jul 8, 2026

Pass through Interrupted exit codes in hopes of passing the fail-with-the-right-exit-code WDL test more
adamnovak
committed
4158f87

Commits on Jul 9, 2026

Move injection back into job class but just one this time
adamnovak
committed
e5e2390