All issues

Report doesn't show "Feature usage in rescoring model" after migration to ristretto

#274

· RalfG opened

on Jul 23, 2026

·

Configuration file for `deeplc_retrain` is still `true` by default, but should be `false`

#273

· RalfG opened

on Jul 22, 2026

Score-direction inference has no override and silently defaults on ties

#272

· ArthurDeclercq opened

on Jul 17, 2026

DeepLC/IM2Deep abort the entire run on any low-ID or tiny-calibration run

#271

· ArthurDeclercq opened

on Jul 17, 2026

Question: peptidoform vs peptide

#257

· vvsbiocode opened

on Apr 21, 2026

Responsible reporting of issues in the Percolator branch

#256

· vvsbiocode opened

on Apr 18, 2026

Move spectrum parsing + matching + annotation into Rust as a single call

#255

· RalfG opened

on Apr 16, 2026

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Automated detection and transformation of rescoring features that should be in log space

#230

· RalfG opened

on Jul 10, 2025

results.mokapot.flashlfq.txt reports Retention time in hours, not minutes

#227

· rodvrees opened

on Apr 30, 2025

Feature request: Avoid redundant MS2PIP predictions by caching identical peptides

#220

· xudonggang opened

on Apr 9, 2025

Add MS²Rescore version in written full config file

#202

· RalfG opened

on Oct 23, 2024

GUI: Allow spaces in input files

#201

· RalfG opened

on Oct 23, 2024