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Data release 2026 - #463
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fix ownership issue in order to fetch git tags for version
… coding explanation
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:00:59Z It would be helpful to show the movie indices as growing color intensity instead of complete different colors. The design is to gradually change so that should be easier to see in the figure. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:01:00Z Need more description of what you are doing here. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:01:00Z Line #1. def get_spike_matrix(stim_times, units_spike_times, bin_edges): Please provide a function doctoring to ALL functions. Feel free to use AI to generate and correct |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:01:01Z Let's try to fix the missing wheel and eye tracking data. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:55Z Missing y axis and x axis label |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:56Z We need to add a section to explain how the behavior works. Otherwise it is a bit confusing |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:57Z Work with Roberto to include code to analyze behavior. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:57Z We are missing the drug injection section, which is key. Also those files include mice performing a behavior. We need to show those : Lick, water reward, running, etc... |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:58Z Line #1. def show_response(ax, window, window_start_time, window_end_time, aspect="auto", vmin=None, vmax=None, yticklabels=[], skipticks=1, xlabel="Time (s)", ylabel="ROI", cbar=True, cbar_label=None): Add DocString throughout |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:59Z Not great selection. Why are some units completely black |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:09:59Z Explain which cell types are otto-tagged |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:10:00Z Same as above, the image are not very convincing here. Would you agree? It could be a matter of changing the colorbar. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:18:00Z You need to explain which mice are passive and which are active. Also many columns below look empty. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:18:01Z Line #1. # Function to convert string representation of a set to an actual set Add docstring to all functions as for all notebooks. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:18:01Z We should explain how to access image area location across all recording datasets.
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:18:02Z A bit hard to see across all plots. Perhaps the x window is too narrow? Maybe worth normalizing the c axis with a percentile value for each. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:18:03Z 0 cells. Maybe worth improving the code?
Also can you add behavior data. Some sessions are active sessions. This is entirely missing from the notebook
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:23:44Z Lots of empty columns as for other notebooks. |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:23:45Z We should add some text explaining a bit more how each mouse differs in genetic and indicator |
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View / edit / reply to this conversation on ReviewNB jeromelecoq commented on 2026-02-16T19:23:46Z Line #4. def plot_trace_over_epochs(trace_arrs, timestamps_arrs, epochs, time_start=None, time_end=None, title=None, trace_labels=None, yaxlabels=None, xlabel=None): Please add doctoring to all functions |
update test.yml
…ws gen, plotting windows/ tuning curves)
Minor changes to response window extraction for clarity+RF/Responsiveness code
add ex responses to full-field dots
Replaced some analyses and added documentation to many sections.
…abook into data_release_2026
Data release 2026 textures
Update psycode notebook
Fix typo in GLO project description and improve clarity of predictive coding explanation
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