Issues

• Neuron reconstruction team to use this version of neuron_morphology to quality control swc and marker files before uploading

  enhancement
  AllenInstitute/neuron_morphology#219 · Filter by author MatthewMallory opened on Jun 8, 2023
  

• Soma features extraction failing due to no morphology attribute

  AllenInstitute/neuron_morphology#203 · Filter by author anukratinigam opened on May 7, 2022

• make release of neuron morphology

  AllenInstitute/neuron_morphology#196 · Filter by author gnayuy opened on Jun 30, 2021
  1

• Compute features outside visual areas

  Epic
  AllenInstitute/neuron_morphology#194 · Filter by author wbwakeman opened on Mar 16, 2021

• circleci failures: Unable to open file, etc

  bug
  AllenInstitute/neuron_morphology#193 · Filter by author tmchartrand opened on Mar 1, 2021

• snap_polygons FromLimsSource functionality broken

  bug
  AllenInstitute/neuron_morphology#190 · Filter by author tmchartrand opened on Feb 26, 2021
  1

• use snap_polygons without pia/wm paths

  enhancement
  AllenInstitute/neuron_morphology#189 · Filter by author tmchartrand opened on Feb 26, 2021
  4

• enable absolute depth measurements by saving path length

  enhancement
  AllenInstitute/neuron_morphology#188 · Filter by author tmchartrand opened on Feb 26, 2021

• Fix breaking neuron_morphology issues

  AllenInstitute/neuron_morphology#186 · Filter by author wbwakeman opened on Oct 27, 2020

• EM transform and features

  AllenInstitute/neuron_morphology#184 · Filter by author wbwakeman opened on Aug 21, 2020

• Create static image of neuron reconstruction

  AllenInstitute/neuron_morphology#183 · Filter by author wbwakeman opened on Aug 20, 2020

• ZeroDivisionError on fMOST registered reconstructions

  AllenInstitute/neuron_morphology#182 · Filter by author wbwakeman opened on Aug 18, 2020

• Create static image of neurite cortical layer histogram

  AllenInstitute/neuron_morphology#181 · Filter by author wbwakeman opened on Aug 17, 2020

• Create named profile for AWS credentials file for neuron_morphology

  AllenInstitute/neuron_morphology#180 · Filter by author wbwakeman opened on Aug 5, 2020

• Make parent-daughter ratio NaN-safe

  AllenInstitute/neuron_morphology#179 · Filter by author wbwakeman opened on Jul 22, 2020

• Investigate features affected by reconstruction node sampling differences

  AllenInstitute/neuron_morphology#178 · Filter by author wbwakeman opened on Jul 22, 2020

• Neuron Morphology Pipeline status tracking

  Epic
  AllenInstitute/neuron_morphology#171 · Filter by author NileGraddis opened on Jun 29, 2020
  2

• Test Tilt from Axon/Apical Dendrite Trunk

  AllenInstitute/neuron_morphology#167 · Filter by author MatthewAitken opened on Jun 11, 2020

• Create design document for feature extraction pipeline

  AllenInstitute/neuron_morphology#156 · Filter by author wbwakeman opened on May 27, 2020

• calculate_number_of_stems() fails to use its parameter node_types

  bug
  AllenInstitute/neuron_morphology#130 · Filter by author gouwens opened on May 4, 2020

• Error loading swc file with trailing whitespace on each line

  bug
  AllenInstitute/neuron_morphology#122 · Filter by author MatthewMallory opened on Apr 16, 2020

• Help users run neuron morphology validation on their local computers

  AllenInstitute/neuron_morphology#110 · Filter by author wbwakeman opened on Apr 8, 2020

• update validation criteria

  AllenInstitute/neuron_morphology#109 · Filter by author wbwakeman opened on Apr 8, 2020

• Validate neuron morphology validation criteria

  AllenInstitute/neuron_morphology#108 · Filter by author wbwakeman opened on Apr 8, 2020

• Update LIMS to use new morphology validation

  AllenInstitute/neuron_morphology#107 · Filter by author wbwakeman opened on Apr 8, 2020