adaptiveSpreadX/setup.py at python_package · nmalysheva/adaptiveSpreadX · GitHub

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from distutils.core import setup, Extension
#from setuptools import setup, Extension
import setuptools
#from setuptools.command.build_ext import build_ext
class get_pybind_include(object):
    """Helper class to determine the pybind11 include path
    The purpose of this class is to postpone importing pybind11
    until it is actually installed, so that the ``get_include()``
    method can be invoked. """

    def __init__(self, user=False):
        self.user = user

    def __str__(self):
        import pybind11
        return pybind11.get_include(self.user)


extension_modules = Extension(
    '_adaptiveSpreadX',
    sources=['_adaptiveSpreadX/src/cpp/configuration/Configuration.cpp',
             '_adaptiveSpreadX/src/cpp/configuration/Exception.cpp',
             '_adaptiveSpreadX/src/cpp/configuration/Stream.cpp',
             '_adaptiveSpreadX/src/cpp/configuration/Helper.cpp',
             '_adaptiveSpreadX/src/cpp/utils/Json.cpp',
             '_adaptiveSpreadX/src/cpp/utils/Parse.cpp',
             '_adaptiveSpreadX/src/cpp/types/Distribution.cpp',
             '_adaptiveSpreadX/src/cpp/types/DistributionImpl.cpp',
             #contact network
             '_adaptiveSpreadX/src/cpp/network/ContactNetwork.cpp',
             '_adaptiveSpreadX/src/cpp/network/IndividualFactory.cpp',
             '_adaptiveSpreadX/src/cpp/network/Interaction.cpp',
             '_adaptiveSpreadX/src/cpp/network/InteractionManager.cpp',
             '_adaptiveSpreadX/src/cpp/network/Settings.cpp',
             '_adaptiveSpreadX/src/cpp/graph/GraphImpl.cpp',
             '_adaptiveSpreadX/src/cpp/types/Propability.cpp', #todo fix the name
             '_adaptiveSpreadX/src/cpp/types/State.cpp',
             '_adaptiveSpreadX/src/cpp/types/NodeId.cpp',
             #algorithm
             '_adaptiveSpreadX/src/cpp/algorithm/ActionsFactory.cpp',
             '_adaptiveSpreadX/src/cpp/algorithm/Algorithm.cpp',
             '_adaptiveSpreadX/src/cpp/algorithm/Settings.cpp',
             '_adaptiveSpreadX/src/cpp/algorithm/SSA.cpp',
             '_adaptiveSpreadX/src/cpp/algorithm/SSATANX.cpp',
             '_adaptiveSpreadX/src/cpp/algorithm/TauLeap.cpp',
             '_adaptiveSpreadX/src/cpp/utils/Random.cpp',
              #pybind11
             '_adaptiveSpreadX/src/cpp/_adaptiveSpreadX.cpp'
            ],
    extra_compile_args=['-std=c++17', '-Wall', '-Wextra',  '-pedantic',  '-Werror'],
    #include_dirs=[f"/Library/Developer/CommandLineTools/usr/include/c++/v1", f"/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include", f"_adaptiveSpreadX/src/cpp"],
    include_dirs=[get_pybind_include(), get_pybind_include(user=True), f"_adaptiveSpreadX/src/cpp"],
    language='c++'
)

setup (name = 'adaptiveSpreadX',
       version = '0.1.0',
       url = 'https://github.com/nmalysheva/adaptiveSpreadX',
       description = 'The adaptiveSpreadX Python Package is a simulation tool designed for modeling and analyzing spreading dynamics on adaptive contact networks.',
       packages = setuptools.find_packages(),
       ext_modules = [extension_modules],
       setup_requires = [
            'pybind11>=2.0.0'
            ],
       install_requires = [
            'pybind11>=2.0.0',
            #'json',
            'numpy',
            #'warnings'
            ],
       include_package_data = True,
       zip_safe = False,
       )