scripts/rebuild_nemo_script at main · jonnyhtw/scripts · GitHub

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#!/bin/bash

#works on w-clim01 22 nov 18

#usage...

# > rebuild_nemo_script u-bd224

module unload netCDF/4.6.1-GCC-7.1.0
module unload HDF5/1.10.1-GCC-7.1.0
module unload Szip
module load netCDF-Fortran/4.4.4-iccifort-2018.1.163-GCC-7.1.0

for dir in /home/$USER/cylc-run/$1/work/*/nemo_cice*/

    do

    echo $dir

    ulimit
    export OMP_NUM_THREADS=4
    MPI_DSM_VERBOSE=1; export MPI_DSM_VERBOSE

    export ID=NZ02-NEB004

    cd $dir

    export DATADIR=$dir
    echo $dir

    export NP=6

    if [ -f ${ID}*T.nc ]
    then
    rm ${ID}*T.nc
    fi

    ## base model monthly
    export TFILE5d=`ls -1 ${ID}*5d*_T_0000.nc`
    export UFILE5d=`ls -1 ${ID}*5d*_U_0000.nc`
    export VFILE5d=`ls -1 ${ID}*5d*_V_0000.nc`
    export WFILE5d=`ls -1 ${ID}*5d*_W_0000.nc`
    export TFILE1m=`ls -1 ${ID}*1m*_T_0000.nc`
    export UFILE1m=`ls -1 ${ID}*1m*_U_0000.nc`
    export VFILE1m=`ls -1 ${ID}*1m*_V_0000.nc`
    export WFILE1m=`ls -1 ${ID}*1m*_W_0000.nc`

    rebuild_nemo -t 4  `basename $TFILE5d _0000.nc` $NP
    rebuild_nemo -t 4  `basename $UFILE5d _0000.nc` $NP
    rebuild_nemo -t 4  `basename $VFILE5d _0000.nc` $NP
    rebuild_nemo -t 4  `basename $WFILE5d _0000.nc` $NP
    rebuild_nemo -t 4  `basename $TFILE1m _0000.nc` $NP
    rebuild_nemo -t 4  `basename $UFILE1m _0000.nc` $NP
    rebuild_nemo -t 4  `basename $VFILE1m _0000.nc` $NP
    rebuild_nemo -t 4  `basename $WFILE1m _0000.nc` $NP

done

cd ~/scripts/