diff --git a/mkdocs.yml b/mkdocs.yml
index 5c8f50f467..acefadb9a8 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -262,6 +262,10 @@ plugins:
         Community:
         - community/*.md
 
+# Hooks
+hooks:
+  - scripts/flatten_md.py
+
 # Navigation
 nav:
   - Home: index.md
diff --git a/overrides/partials/actions.html b/overrides/partials/actions.html
index 058316e363..d87025e25a 100644
--- a/overrides/partials/actions.html
+++ b/overrides/partials/actions.html
@@ -5,15 +5,14 @@
       {% include ".icons/" ~ icon ~ ".svg" %}
     </a>
   {% endif %}
+  {% set md_href = (page.url.rstrip('/') ~ ".md") | url %}
   {% if "content.action.view" in features %}
-    {% set view_url = page.url | url ~ "index.md" %}
-    <a href="{{ view_url }}" title="View this page as Markdown" class="md-content__button md-icon">
+    <a href="{{ md_href }}" title="View this page as Markdown" class="md-content__button md-icon">
       {% set icon = config.theme.icon.view or "material/file-eye-outline" %}
       {% include ".icons/" ~ icon ~ ".svg" %}
     </a>
   {% endif %}
-  {% set raw_url = page.url | url ~ "index.md" %}
-  <button id="copy-page-btn" class="md-content__button md-icon" title="Copy page as Markdown" data-url="{{ raw_url }}">
+  <button id="copy-page-btn" class="md-content__button md-icon" title="Copy page as Markdown" data-url="{{ md_href }}">
     {% include ".icons/material/content-copy.svg" %}
   </button>
 {% endif %}
diff --git a/scripts/flatten_md.py b/scripts/flatten_md.py
new file mode 100644
index 0000000000..fbea7ead1b
--- /dev/null
+++ b/scripts/flatten_md.py
@@ -0,0 +1,93 @@
+"""MkDocs post-build hook: flatten per-page Markdown from ``page/index.md`` to
+``page.md``.
+
+Registered via the top-level ``hooks:`` list in ``mkdocs.yml``. Runs after the
+``mkdocs-llmstxt`` plugin (see the ``event_priority`` on ``on_post_build``).
+"""
+
+from __future__ import annotations
+
+import logging
+import re
+from pathlib import Path, PurePosixPath
+
+import mkdocs.plugins
+
+
+def flat_md_target(rel_path: str) -> str | None:
+    """Map a generated Markdown file's site-relative path to its flat target.
+
+    Args:
+        rel_path: Path of the generated file relative to ``site_dir``, POSIX form.
+
+    Returns:
+        The new site-relative path (e.g. ``agents/config.md``), or ``None`` if
+        the file must stay in place (root ``index.md`` or a non-``index.md`` file).
+    """
+    p = PurePosixPath(rel_path)
+    if p.name != "index.md":
+        return None
+    parent = p.parent
+    if parent in (PurePosixPath("."), PurePosixPath("")):
+        return None  # root site/index.md stays as-is
+    return f"{parent.as_posix()}.md"
+
+
+def rewrite_index_links(text: str, site_url: str) -> str:
+    """Rewrite ``{site_url}/<path>/index.md`` links to ``{site_url}/<path>.md``.
+
+    The bare homepage link ``{site_url}/index.md`` has no intermediate path
+    segment and is left unchanged. Scoping to ``site_url`` avoids corrupting
+    unrelated URLs that merely contain the substring ``index.md``.
+    """
+    base = site_url.rstrip("/")
+    pattern = re.compile(re.escape(base) + r"/([^\s)]+?)/index\.md")
+    return pattern.sub(lambda m: f"{base}/{m.group(1)}.md", text)
+
+
+log = logging.getLogger("mkdocs.hooks.flatten_md")
+
+
+@mkdocs.plugins.event_priority(-100)
+def on_post_build(config, **kwargs) -> None:  # noqa: ARG001
+    """Rename generated ``index.md`` files to flat ``page.md`` and fix links.
+
+    Priority ``-100`` ensures this runs after the ``mkdocs-llmstxt`` plugin's
+    own ``on_post_build`` (lower priority runs later).
+    """
+    site_dir = Path(config["site_dir"])
+    site_url = config["site_url"]
+
+    # Pass 1: rename <dir>/index.md -> <dir>.md (root index.md is left alone).
+    renamed = 0
+    for md_path in list(site_dir.rglob("index.md")):
+        rel = md_path.relative_to(site_dir).as_posix()
+        target_rel = flat_md_target(rel)
+        if target_rel is None:
+            continue
+        md_path.replace(site_dir / target_rel)
+        renamed += 1
+
+    # Pass 2: rewrite site-internal .../index.md links in all text outputs.
+    # Load-bearing assumption: internal .md links are absolute {site_url}/... URLs
+    # because mkdocs-llmstxt normalizes them via its _convert_to_absolute_link, so
+    # rewrite_index_links only handles absolute links; relative .../index.md links
+    # are not expected here.
+    rewritten = 0
+    targets = list(site_dir.rglob("*.md"))
+    for extra in ("llms.txt", "llms-full.txt"):
+        extra_path = site_dir / extra
+        if extra_path.exists():
+            targets.append(extra_path)
+    for path in targets:
+        text = path.read_text(encoding="utf8")
+        new_text = rewrite_index_links(text, site_url)
+        if new_text != text:
+            path.write_text(new_text, encoding="utf8")
+            rewritten += 1
+
+    log.info(
+        "flatten_md: renamed %d markdown file(s), rewrote links in %d file(s)",
+        renamed,
+        rewritten,
+    )
diff --git a/scripts/test_flatten_md.py b/scripts/test_flatten_md.py
new file mode 100644
index 0000000000..3be6147efe
--- /dev/null
+++ b/scripts/test_flatten_md.py
@@ -0,0 +1,118 @@
+from flatten_md import flat_md_target, on_post_build, rewrite_index_links
+
+SITE = "https://adk.dev"
+
+
+def test_flat_md_target_regular_page():
+    assert flat_md_target("agents/config/index.md") == "agents/config.md"
+
+
+def test_flat_md_target_section_index():
+    assert flat_md_target("agents/index.md") == "agents.md"
+
+
+def test_flat_md_target_root_index_stays():
+    assert flat_md_target("index.md") is None
+
+
+def test_flat_md_target_non_index_ignored():
+    assert flat_md_target("agents/config.md") is None
+
+
+def test_rewrite_links_regular_page():
+    text = "[cfg](https://adk.dev/agents/config/index.md)"
+    assert rewrite_index_links(text, SITE) == "[cfg](https://adk.dev/agents/config.md)"
+
+
+def test_rewrite_links_section_index():
+    text = "See https://adk.dev/agents/index.md for details"
+    assert rewrite_index_links(text, SITE) == "See https://adk.dev/agents.md for details"
+
+
+def test_rewrite_links_homepage_unchanged():
+    text = "Home: https://adk.dev/index.md"
+    assert rewrite_index_links(text, SITE) == "Home: https://adk.dev/index.md"
+
+
+def test_rewrite_links_trailing_slash_site_url():
+    text = "https://adk.dev/agents/config/index.md"
+    assert rewrite_index_links(text, "https://adk.dev/") == "https://adk.dev/agents/config.md"
+
+
+def test_rewrite_links_idempotent():
+    once = rewrite_index_links("https://adk.dev/agents/config/index.md", SITE)
+    assert rewrite_index_links(once, SITE) == once
+
+
+def _build_fake_site(site_root):
+    """Create a realistic post-build site layout under ``site_root``.
+
+    Returns the ``config`` dict expected by ``on_post_build``.
+    """
+    (site_root / "agents" / "config").mkdir(parents=True)
+    (site_root / "agents" / "config" / "index.md").write_text(
+        "[agents](https://adk.dev/agents/index.md)\n"
+        "[qs](https://adk.dev/get-started/quickstart/index.md)\n",
+        encoding="utf8",
+    )
+    (site_root / "agents" / "index.md").write_text(
+        "[cfg](https://adk.dev/agents/config/index.md)\n",
+        encoding="utf8",
+    )
+    (site_root / "index.md").write_text(
+        "Home: https://adk.dev/index.md\n",
+        encoding="utf8",
+    )
+    (site_root / "llms.txt").write_text(
+        "- [X](https://adk.dev/agents/config/index.md)\n",
+        encoding="utf8",
+    )
+    (site_root / "llms-full.txt").write_text(
+        "See https://adk.dev/agents/index.md for details\n",
+        encoding="utf8",
+    )
+    return {"site_dir": str(site_root), "site_url": SITE}
+
+
+def test_on_post_build_renames_layout(tmp_path):
+    site_root = tmp_path / "site"
+    config = _build_fake_site(site_root)
+
+    on_post_build(config)
+
+    # Flat targets exist; original nested index.md files are gone.
+    assert (site_root / "agents" / "config.md").exists()
+    assert not (site_root / "agents" / "config" / "index.md").exists()
+    assert (site_root / "agents.md").exists()
+    assert not (site_root / "agents" / "index.md").exists()
+
+    # Root index.md is left in place (not renamed).
+    assert (site_root / "index.md").exists()
+
+
+def test_on_post_build_rewrites_links(tmp_path):
+    site_root = tmp_path / "site"
+    config = _build_fake_site(site_root)
+
+    on_post_build(config)
+
+    config_md = (site_root / "agents" / "config.md").read_text(encoding="utf8")
+    assert "https://adk.dev/agents.md" in config_md
+    assert "https://adk.dev/get-started/quickstart.md" in config_md
+    assert "index.md" not in config_md
+
+    agents_md = (site_root / "agents.md").read_text(encoding="utf8")
+    assert "https://adk.dev/agents/config.md" in agents_md
+    assert "index.md" not in agents_md
+
+    llms = (site_root / "llms.txt").read_text(encoding="utf8")
+    assert "https://adk.dev/agents/config.md" in llms
+    assert "index.md" not in llms
+
+    llms_full = (site_root / "llms-full.txt").read_text(encoding="utf8")
+    assert "https://adk.dev/agents.md" in llms_full
+    assert "index.md" not in llms_full
+
+    # Bare homepage link is preserved unchanged.
+    root_md = (site_root / "index.md").read_text(encoding="utf8")
+    assert root_md == "Home: https://adk.dev/index.md\n"