Issues

Error when running stereoscope ...
almaan/stereoscope#41 · opened on Feb 6, 2024
Calculation/Prepation for the First Column of Spatial Transcriptomics (ST) Count Data File
almaan/stereoscope#40 · opened on Nov 9, 2023
stereoscope test occurred error
almaan/stereoscope#39 · opened on Oct 1, 2023
How to choose a right batch size?
almaan/stereoscope#38 · opened on Jun 25, 2023
How can I get the top genes for a celltype?
almaan/stereoscope#37 · opened on Apr 27, 2023
2
RUN ERROR：One or more of the specified paths to the sc data does not exist
almaan/stereoscope#35 · opened on Mar 4, 2023
stereoscope test Error
almaan/stereoscope#34 · opened on Mar 1, 2023
2
How to map all the cell type in a single visium slide
almaan/stereoscope#33 · opened on Nov 7, 2022
running the stereoscope command for method comparison is throwing some error
almaan/stereoscope#31 · opened on Jun 14, 2022
10
test error
almaan/stereoscope#30 · opened on Dec 30, 2021
1
Recycling sc models
almaan/stereoscope#29 · opened on Nov 4, 2021
Number of cores/threads
almaan/stereoscope#28 · opened on Aug 20, 2021
1
counts of gene g at spot s from cell c?
almaan/stereoscope#26 · opened on May 25, 2021
2
Strategy for selections of genes
almaan/stereoscope#24 · opened on Apr 26, 2021
4
Exclude spots not covered by the tissue
almaan/stereoscope#23 · opened on Dec 10, 2020
Interaction with AnnData
almaan/stereoscope#18 · opened on Sep 11, 2020
6
gpu utilization
almaan/stereoscope#17 · opened on Aug 21, 2020
--silent_mode still prints output
almaan/stereoscope#16 · opened on Aug 21, 2020
2