Issues

• Potential winsorization improvement

  WayScience/targeted_fibrosis_drug_screen#54 · Filter by author wli51 opened on Oct 3, 2026

• Consider upgrading environments from conda to uv

  WayScience/targeted_fibrosis_drug_screen#50 · Filter by author jenna-tomkinson opened on Sep 3, 2026

• Update single-cell QC thresholds to yaml to fit with coSMicQC injest

  WayScience/targeted_fibrosis_drug_screen#42 · Filter by author jenna-tomkinson opened on Apr 6, 2026

• In-depth look at optimizing cut-off threshold for single-cell QC

  WayScience/targeted_fibrosis_drug_screen#38 · Filter by author jenna-tomkinson opened on Feb 2, 2026

• Potential FOV failure heatmap figure

  WayScience/targeted_fibrosis_drug_screen#37 · Filter by author jenna-tomkinson opened on Feb 2, 2026

• "PercentMaximal" calculation reevaluation

  enhancement
  WayScience/targeted_fibrosis_drug_screen#32 · Filter by author jenna-tomkinson opened on Jan 12, 2026
  

• Update whole image QC plots to include across whole dataset plots

  WayScience/targeted_fibrosis_drug_screen#31 · Filter by author jenna-tomkinson opened on Jan 9, 2026

• Add changes to cp_parallel util to main CP_Parallel repo

  WayScience/targeted_fibrosis_drug_screen#28 · Filter by author jenna-tomkinson opened on Jun 10, 2025

• Update external paths with symlinks, if possible.

  WayScience/targeted_fibrosis_drug_screen#26 · Filter by author jenna-tomkinson opened on Apr 29, 2025

• Refactor extracting performance metrics notebook to be more simple and concise

  WayScience/targeted_fibrosis_drug_screen#18 · Filter by author jenna-tomkinson opened on Apr 8, 2025

• Rerun combined_batch1 model with new training and testing sets

  bug
  WayScience/targeted_fibrosis_drug_screen#17 · Filter by author jenna-tomkinson opened on Apr 7, 2025
  

• Update scripts folders to be called nbconverted which is more correct

  WayScience/targeted_fibrosis_drug_screen#14 · Filter by author jenna-tomkinson opened on Mar 31, 2025

• Refactor IC to not save corrected images but save the function

  documentationenhancement
  WayScience/targeted_fibrosis_drug_screen#13 · Filter by author jenna-tomkinson opened on Mar 14, 2025
  

• Update DropBox spacing path issue (check it doesn't cause issues)

  WayScience/targeted_fibrosis_drug_screen#5 · Filter by author jenna-tomkinson opened on Oct 8, 2024