Issues

• GNPS2 - MS2querry missing default models

  CCMS-UCSD/GNPS_Workflows#909 · Filter by author DolmaMi opened on Sep 30, 2026

• Disappearance of Molecular Formula and Adduct Information in GNPS2 FBMN Output

  CCMS-UCSD/GNPS_Workflows#908 · Filter by author evepharma opened on Sep 9, 2026
  2

• Request to update registered email for GNPS2 token application

  CCMS-UCSD/GNPS_Workflows#907 · Filter by author junjunwang188 opened on Aug 26, 2026

• GNPS2 Bug Report: Mirror Spectrum Viewer Fails to Load Query Spectrum (500 Internal Server Error)

  CCMS-UCSD/GNPS_Workflows#906 · Filter by author TTK1111 opened on Jul 27, 2026

• FAIL in clone FBMN analysis

  CCMS-UCSD/GNPS_Workflows#905 · Filter by author RiccardoTr opened on Jul 16, 2026
  2

• Major Reproducibility issue with Classical Molecular Networking library annotations (METABOLOMICS-SNETS-V2 release_30)

  CCMS-UCSD/GNPS_Workflows#904 · Filter by author Anand41352 opened on Jul 1, 2026
  2

• Daily question: When will we be able to access your website service?

  CCMS-UCSD/GNPS_Workflows#903 · Filter by author gwq-nb opened on Jun 15, 2026

• Query_RT null in results from GNPS2 library search workflow

  CCMS-UCSD/GNPS_Workflows#902 · Filter by author Tdicks92 opened on May 16, 2026

• Problem with files upload via FTP

  CCMS-UCSD/GNPS_Workflows#901 · Filter by author Celioffa opened on May 12, 2026

• MS2LDA workflow crashes with KeyError: 'motifs' from acquire_motifdb() even when all MotifDB motif sets are excluded

  CCMS-UCSD/GNPS_Workflows#900 · Filter by author Ori-Sha1 opened on Apr 3, 2026

• Request to update GNPS2 registration email from personal to institutional

  CCMS-UCSD/GNPS_Workflows#899 · Filter by author caixukunaictrl11-lgtm opened on Mar 31, 2026

• MS2LDA workflow fails when MotifDB set to exclude (KeyError: 'motifs')

  enhancement
  CCMS-UCSD/GNPS_Workflows#898 · Filter by author Ori-Sha1 opened on Mar 30, 2026

• Classic GNPS negative MS data picking very few molecules and no networks

  CCMS-UCSD/GNPS_Workflows#897 · Filter by author Natalia-M-V opened on Mar 10, 2026
  3

• Request to update email address for GNPS2 account

  CCMS-UCSD/GNPS_Workflows#896 · Filter by author talyorchikai opened on Jan 28, 2026

• Server error 503/500 when accessing GNPS / workflows not loading

  CCMS-UCSD/GNPS_Workflows#895 · Filter by author irenemalaifani-rgb opened on Nov 30, 2025
  2

• Server error 503/500 when accessing GNPS / workflows not loading

  CCMS-UCSD/GNPS_Workflows#894 · Filter by author irenemalaifani-rgb opened on Nov 30, 2025

• Charge zero to spectra

  CCMS-UCSD/GNPS_Workflows#892 · Filter by author Thichiro opened on Sep 1, 2025

• bug report: Progenesis workflow

  CCMS-UCSD/GNPS_Workflows#891 · Filter by author wvmnj opened on Jul 25, 2025

• TypeError: unorderable types: NoneType() < str() in search

  CCMS-UCSD/GNPS_Workflows#890 · Filter by author trljcl opened on May 13, 2025

• MS-DIAL documentation on Ion Mobility Spectrometry data processing

  CCMS-UCSD/GNPS_Workflows#889 · Filter by author wh257 opened on Feb 27, 2025
  1

• Max component size can not be changed in FBMN workflow

  CCMS-UCSD/GNPS_Workflows#887 · Filter by author IngvildRyde opened on Feb 3, 2025
  4

• FBMN fails during file transfer

  CCMS-UCSD/GNPS_Workflows#886 · Filter by author JosuaCarl opened on Jan 15, 2025

• Ion Identity networking result error

  CCMS-UCSD/GNPS_Workflows#885 · Filter by author Yuan-666-lab opened on Dec 25, 2024

• Trouble with the MOLNETENHANCER

  CCMS-UCSD/GNPS_Workflows#884 · Filter by author adriherar opened on Dec 20, 2024

• Is this a bug or I didnt fill my ReDU form correctly?

  CCMS-UCSD/GNPS_Workflows#883 · Filter by author diaorao opened on Oct 30, 2024